Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15250

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,885,392	+				+1.5
2,885,431	-				+0.4
2,885,455	+				-0.3
2,885,552	+				-1.9
2,885,553	-				-0.5
2,885,629	+				-0.2
2,885,713	+				-0.2
2,885,714	-				-0.7
2,885,714	-				-0.4
2,885,714	-				-0.5
2,885,714	-				-3.1
2,885,761	+				-1.7
2,885,761	+				-0.8
2,885,761	+				+0.3
2,885,762	-				-1.9
2,885,938	-	purE	LU632_RS15245	0.29	-0.3
2,886,103	+	purE	LU632_RS15245	0.61	-2.9
2,886,141	+	purE	LU632_RS15245	0.69	-1.3
2,886,386	-				-1.1
2,886,622	+	purK	LU632_RS15250	0.30	-1.3
2,886,662	+	purK	LU632_RS15250	0.34	-1.9
2,886,698	-	purK	LU632_RS15250	0.37	-0.6
2,886,812	+	purK	LU632_RS15250	0.48	-2.1
2,886,813	-	purK	LU632_RS15250	0.48	-1.8
2,886,947	+	purK	LU632_RS15250	0.60	-2.5
2,886,948	-	purK	LU632_RS15250	0.60	-1.0
2,886,948	-	purK	LU632_RS15250	0.60	-2.2
2,886,948	-	purK	LU632_RS15250	0.60	+0.5
2,886,951	+	purK	LU632_RS15250	0.60	+0.2
2,886,951	+	purK	LU632_RS15250	0.60	-3.7
2,886,951	+	purK	LU632_RS15250	0.60	-2.2
2,886,952	-	purK	LU632_RS15250	0.60	+0.5
2,886,983	+	purK	LU632_RS15250	0.63	+0.0
2,886,986	-	purK	LU632_RS15250	0.64	-1.1
2,887,029	-	purK	LU632_RS15250	0.68	-0.1
2,887,145	+	purK	LU632_RS15250	0.78	-0.5
2,887,268	+	purK	LU632_RS15250	0.90	-2.3
2,887,324	-				-1.8
2,887,326	-				-2.6
2,887,747	-				-1.7
2,887,886	-		LU632_RS15255	0.15	-2.4
2,887,886	-		LU632_RS15255	0.15	+1.5
2,888,002	+		LU632_RS15255	0.20	+1.5
2,888,002	+		LU632_RS15255	0.20	+0.4
2,888,156	-		LU632_RS15255	0.26	-1.1
2,888,305	+		LU632_RS15255	0.33	+0.2
2,888,305	+		LU632_RS15255	0.33	+1.8
2,888,376	+		LU632_RS15255	0.36	+3.7
2,888,376	+		LU632_RS15255	0.36	+0.8