Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14960

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS14950 and LU632_RS14955 are separated by 8 nucleotidesLU632_RS14955 and LU632_RS14960 overlap by 8 nucleotidesLU632_RS14960 and LU632_RS14965 are separated by 103 nucleotidesLU632_RS14965 and LU632_RS14970 are separated by 73 nucleotides LU632_RS14950: LU632_RS14950 - class I tRNA ligase family protein, at 2,842,551 to 2,844,038 _RS14950 LU632_RS14955: LU632_RS14955 - cupin domain-containing protein, at 2,844,047 to 2,844,358 _RS14955 LU632_RS14960: LU632_RS14960 - FAD-binding oxidoreductase, at 2,844,351 to 2,845,508 _RS14960 LU632_RS14965: LU632_RS14965 - IS1 family transposase, at 2,845,612 to 2,846,309 _RS14965 LU632_RS14970: LU632_RS14970 - transposase, at 2,846,383 to 2,846,619 _RS14970 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -2 -1 0 1at 2844.815 kb on - strand, within LU632_RS14960at 2845.534 kb on + strandat 2845.546 kb on - strandat 2846.369 kb on + strandat 2846.369 kb on + strandat 2846.369 kb on + strandat 2846.370 kb on - strandat 2846.370 kb on - strandat 2846.384 kb on + strandat 2846.484 kb on - strand, within LU632_RS14970

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
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2,844,815 - LU632_RS14960 0.40 -1.5
2,845,534 + +1.3
2,845,546 - -0.1
2,846,369 + -0.4
2,846,369 + +1.5
2,846,369 + +0.3
2,846,370 - -0.5
2,846,370 - +0.5
2,846,384 + -2.3
2,846,484 - LU632_RS14970 0.43 +0.6

Or see this region's nucleotide sequence