Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS14950 and LU632_RS14955 are separated by 8 nucleotides LU632_RS14955 and LU632_RS14960 overlap by 8 nucleotides LU632_RS14960 and LU632_RS14965 are separated by 103 nucleotides LU632_RS14965 and LU632_RS14970 are separated by 73 nucleotides
LU632_RS14950: LU632_RS14950 - class I tRNA ligase family protein, at 2,842,551 to 2,844,038
_RS14950
LU632_RS14955: LU632_RS14955 - cupin domain-containing protein, at 2,844,047 to 2,844,358
_RS14955
LU632_RS14960: LU632_RS14960 - FAD-binding oxidoreductase, at 2,844,351 to 2,845,508
_RS14960
LU632_RS14965: LU632_RS14965 - IS1 family transposase, at 2,845,612 to 2,846,309
_RS14965
LU632_RS14970: LU632_RS14970 - transposase, at 2,846,383 to 2,846,619
_RS14970
Position (kb)
2844
2845
2846 Strain fitness (log2 ratio)
-2
-1
0
1 at 2844.815 kb on - strand, within LU632_RS14960 at 2845.534 kb on + strand at 2845.546 kb on - strand at 2846.369 kb on + strand at 2846.369 kb on + strand at 2846.369 kb on + strand at 2846.370 kb on - strand at 2846.370 kb on - strand at 2846.384 kb on + strand at 2846.484 kb on - strand, within LU632_RS14970
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 2,844,815 - LU632_RS14960 0.40 -1.5 2,845,534 + +1.3 2,845,546 - -0.1 2,846,369 + -0.4 2,846,369 + +1.5 2,846,369 + +0.3 2,846,370 - -0.5 2,846,370 - +0.5 2,846,384 + -2.3 2,846,484 - LU632_RS14970 0.43 +0.6
Or see this region's nucleotide sequence