Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14950

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS14945 and LU632_RS14950 are separated by 9 nucleotidesLU632_RS14950 and LU632_RS14955 are separated by 8 nucleotidesLU632_RS14955 and LU632_RS14960 overlap by 8 nucleotides LU632_RS14945: LU632_RS14945 - SidA/IucD/PvdA family monooxygenase, at 2,841,267 to 2,842,541 _RS14945 LU632_RS14950: LU632_RS14950 - class I tRNA ligase family protein, at 2,842,551 to 2,844,038 _RS14950 LU632_RS14955: LU632_RS14955 - cupin domain-containing protein, at 2,844,047 to 2,844,358 _RS14955 LU632_RS14960: LU632_RS14960 - FAD-binding oxidoreductase, at 2,844,351 to 2,845,508 _RS14960 Position (kb) 2842 2843 2844 2845Strain fitness (log2 ratio) -3 -2 -1 0 1at 2842.467 kb on - strandat 2843.093 kb on + strand, within LU632_RS14950at 2843.118 kb on + strand, within LU632_RS14950at 2844.815 kb on - strand, within LU632_RS14960

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
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2,842,467 - +0.1
2,843,093 + LU632_RS14950 0.36 -1.9
2,843,118 + LU632_RS14950 0.38 -3.2
2,844,815 - LU632_RS14960 0.40 -1.5

Or see this region's nucleotide sequence