Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14785

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,809,613	+	ptsG	LU632_RS14780	0.50	-1.1
2,809,613	+	ptsG	LU632_RS14780	0.50	+0.4
2,809,656	+	ptsG	LU632_RS14780	0.53	-1.6
2,809,695	+	ptsG	LU632_RS14780	0.56	+0.2
2,809,740	-	ptsG	LU632_RS14780	0.59	-1.6
2,809,742	-	ptsG	LU632_RS14780	0.59	-0.7
2,809,742	-	ptsG	LU632_RS14780	0.59	+2.4
2,809,866	+	ptsG	LU632_RS14780	0.68	-0.1
2,809,925	+	ptsG	LU632_RS14780	0.72	-1.1
2,809,925	+	ptsG	LU632_RS14780	0.72	+0.8
2,809,976	-	ptsG	LU632_RS14780	0.75	-2.7
2,809,979	-	ptsG	LU632_RS14780	0.75	-0.9
2,810,067	+	ptsG	LU632_RS14780	0.82	+1.0
2,810,332	-				-1.7
2,810,337	+				-0.7
2,810,413	-				+0.7
2,810,522	+				+1.6
2,810,531	+				-0.4
2,810,532	-				+0.4
2,810,557	-				+0.1
2,810,563	-				-1.6
2,810,572	+				-0.7
2,810,572	+				-0.1
2,810,572	+				-2.1
2,810,693	+		LU632_RS14785	0.13	+0.6
2,810,693	+		LU632_RS14785	0.13	-0.3
2,810,693	+		LU632_RS14785	0.13	+2.3
2,810,694	-		LU632_RS14785	0.13	-0.6
2,810,695	+		LU632_RS14785	0.13	+3.5
2,810,695	+		LU632_RS14785	0.13	-1.6
2,810,696	-		LU632_RS14785	0.13	+2.1
2,810,696	-		LU632_RS14785	0.13	+0.6
2,810,696	-		LU632_RS14785	0.13	-0.4
2,810,716	+		LU632_RS14785	0.16	+3.0
2,810,717	-		LU632_RS14785	0.16	-0.7
2,810,762	-		LU632_RS14785	0.22	-2.9
2,810,782	-		LU632_RS14785	0.24	-3.8
2,810,803	+		LU632_RS14785	0.27	+1.3
2,810,803	+		LU632_RS14785	0.27	+0.0
2,810,803	+		LU632_RS14785	0.27	-1.9
2,810,803	+		LU632_RS14785	0.27	-1.1
2,810,804	-		LU632_RS14785	0.27	-2.1
2,810,864	+		LU632_RS14785	0.35	+1.1
2,810,866	+		LU632_RS14785	0.35	+1.2
2,810,973	-		LU632_RS14785	0.48	-1.7
2,811,035	+		LU632_RS14785	0.56	+1.0
2,811,036	-		LU632_RS14785	0.56	+1.0
2,811,088	+		LU632_RS14785	0.63	+2.1
2,811,177	+		LU632_RS14785	0.74	+0.3
2,811,178	-		LU632_RS14785	0.74	+0.7
2,811,199	+		LU632_RS14785	0.77	+1.8
2,811,199	+		LU632_RS14785	0.77	-0.4
2,811,200	-		LU632_RS14785	0.77	+0.3
2,811,200	-		LU632_RS14785	0.77	-2.6
2,811,244	+		LU632_RS14785	0.82	+1.4
2,811,276	-		LU632_RS14785	0.86	-0.8
2,811,309	+				-1.6
2,811,310	-				+0.3
2,811,340	+				+1.2
2,811,387	+				+0.1
2,811,387	+				-2.9
2,811,387	+				+0.8
2,811,388	-				+2.0
2,811,388	-				-0.2