Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14745

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,803,070	+		LU632_RS14740	0.55	-0.7
2,803,143	+		LU632_RS14740	0.60	-0.7
2,803,143	+		LU632_RS14740	0.60	-2.4
2,803,251	+		LU632_RS14740	0.69	-0.1
2,803,251	+		LU632_RS14740	0.69	+0.4
2,803,252	-		LU632_RS14740	0.69	+0.8
2,803,252	-		LU632_RS14740	0.69	-2.4
2,803,252	-		LU632_RS14740	0.69	+0.4
2,803,407	+		LU632_RS14740	0.81	-1.1
2,803,408	-		LU632_RS14740	0.81	-0.2
2,803,467	+		LU632_RS14740	0.86	+0.5
2,803,467	+		LU632_RS14740	0.86	+0.0
2,803,467	+		LU632_RS14740	0.86	-0.6
2,803,467	+		LU632_RS14740	0.86	-0.7
2,803,467	+		LU632_RS14740	0.86	-0.8
2,803,468	-		LU632_RS14740	0.86	-2.9
2,803,468	-		LU632_RS14740	0.86	-0.1
2,803,513	+		LU632_RS14740	0.89	-1.2
2,803,513	+		LU632_RS14740	0.89	+0.2
2,803,516	+		LU632_RS14740	0.89	+2.1
2,803,639	+				+1.2
2,803,653	+				-1.5
2,803,654	-				-1.9
2,803,741	+				+0.4
2,803,938	+				+0.4
2,804,000	+				-2.4
2,804,037	-				-0.4
2,804,509	+		LU632_RS14745	0.61	-1.9
2,804,867	+				-0.7
2,804,869	+				+3.1
2,804,919	-				-1.1
2,804,997	+	ycfP	LU632_RS14750	0.18	+0.3
2,805,134	+	ycfP	LU632_RS14750	0.42	+0.4
2,805,134	+	ycfP	LU632_RS14750	0.42	+0.2
2,805,134	+	ycfP	LU632_RS14750	0.42	-0.2
2,805,135	-	ycfP	LU632_RS14750	0.43	+3.3
2,805,135	-	ycfP	LU632_RS14750	0.43	-0.6
2,805,135	-	ycfP	LU632_RS14750	0.43	-3.3
2,805,135	-	ycfP	LU632_RS14750	0.43	+0.6
2,805,165	+	ycfP	LU632_RS14750	0.48	+0.8
2,805,166	-	ycfP	LU632_RS14750	0.48	-1.6
2,805,166	-	ycfP	LU632_RS14750	0.48	-1.6
2,805,166	-	ycfP	LU632_RS14750	0.48	+1.6
2,805,250	+	ycfP	LU632_RS14750	0.63	+0.7
2,805,330	+	ycfP	LU632_RS14750	0.77	+1.2
2,805,330	+	ycfP	LU632_RS14750	0.77	+0.4
2,805,330	+	ycfP	LU632_RS14750	0.77	+0.4
2,805,356	+	ycfP	LU632_RS14750	0.82	-0.6
2,805,360	+	ycfP	LU632_RS14750	0.83	-0.7
2,805,370	+	ycfP	LU632_RS14750	0.84	-0.6
2,805,371	-	ycfP	LU632_RS14750	0.85	-1.2
2,805,371	-	ycfP	LU632_RS14750	0.85	-0.1
2,805,447	-				-3.1
2,805,447	-				+0.8
2,805,451	+				+1.4
2,805,452	-				+0.3
2,805,597	+	nagZ	LU632_RS14755	0.11	+0.0
2,805,597	+	nagZ	LU632_RS14755	0.11	-0.2
2,805,598	-	nagZ	LU632_RS14755	0.11	-1.9
2,805,598	-	nagZ	LU632_RS14755	0.11	-2.6
2,805,598	-	nagZ	LU632_RS14755	0.11	-1.1
2,805,638	-	nagZ	LU632_RS14755	0.15	-1.6
2,805,726	+	nagZ	LU632_RS14755	0.23	+1.4
2,805,727	-	nagZ	LU632_RS14755	0.24	+0.5
2,805,791	+	nagZ	LU632_RS14755	0.30	-0.7
2,805,792	-	nagZ	LU632_RS14755	0.30	-2.4
2,805,815	-	nagZ	LU632_RS14755	0.32	+0.4