Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14550

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,765,012	-		LU632_RS14535	0.77	-1.1
2,765,105	+				-2.8
2,765,210	-		LU632_RS14540	0.20	+0.1
2,765,210	-		LU632_RS14540	0.20	-1.2
2,765,325	+		LU632_RS14540	0.40	+2.3
2,765,325	+		LU632_RS14540	0.40	+0.2
2,765,326	-		LU632_RS14540	0.41	-0.3
2,765,326	-		LU632_RS14540	0.41	+2.0
2,765,367	+		LU632_RS14540	0.48	-0.6
2,765,368	-		LU632_RS14540	0.48	-3.1
2,765,437	-		LU632_RS14540	0.60	-1.8
2,765,437	-		LU632_RS14540	0.60	-1.6
2,765,614	+				-0.6
2,765,614	+				-0.5
2,765,615	-				+1.9
2,765,615	-				+0.4
2,765,824	+		LU632_RS14545	0.47	+2.2
2,765,825	-		LU632_RS14545	0.48	-1.1
2,765,925	+		LU632_RS14545	0.88	-1.7
2,765,987	-				-2.7
2,765,989	-				-0.9
2,765,991	-				-0.0
2,766,133	+		LU632_RS14550	0.18	+1.5
2,766,246	-		LU632_RS14550	0.28	-0.5
2,766,254	+		LU632_RS14550	0.28	+0.8
2,766,254	+		LU632_RS14550	0.28	+0.6
2,766,258	+		LU632_RS14550	0.29	+0.6
2,766,258	+		LU632_RS14550	0.29	-0.6
2,766,259	-		LU632_RS14550	0.29	+0.2
2,766,259	-		LU632_RS14550	0.29	-0.5
2,766,314	+		LU632_RS14550	0.34	+0.1
2,766,315	-		LU632_RS14550	0.34	-0.3
2,766,317	-		LU632_RS14550	0.34	-0.3
2,766,360	+		LU632_RS14550	0.38	-3.5
2,766,363	-		LU632_RS14550	0.38	-0.6
2,766,460	-		LU632_RS14550	0.47	-1.1
2,766,567	+		LU632_RS14550	0.56	-0.4
2,766,567	+		LU632_RS14550	0.56	-1.2
2,766,568	-		LU632_RS14550	0.56	+0.3
2,766,568	-		LU632_RS14550	0.56	+0.4
2,766,568	-		LU632_RS14550	0.56	-1.1
2,766,769	-		LU632_RS14550	0.74	+0.1
2,766,951	+				+1.2
2,766,992	+				+0.3
2,766,992	+				+0.3
2,767,059	+				-2.2
2,767,060	-				+2.3