Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14255

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,728,835	+		LU632_RS14240	0.76	+1.4
2,728,835	+		LU632_RS14240	0.76	+0.2
2,728,848	+		LU632_RS14240	0.78	+1.0
2,728,966	+				+0.4
2,729,007	-				+0.1
2,729,007	-				+1.7
2,729,310	+				-2.5
2,729,377	-				-1.2
2,729,576	-		LU632_RS14250	0.61	-1.6
2,729,576	-		LU632_RS14250	0.61	+0.0
2,730,623	-				-0.0
2,730,623	-				+1.4
2,730,642	+				-1.5
2,730,642	+				-2.5
2,730,704	+		LU632_RS14260	0.17	+1.1
2,730,727	+		LU632_RS14260	0.21	+0.4
2,730,828	+		LU632_RS14260	0.36	+0.6
2,730,828	-		LU632_RS14260	0.36	-2.8
2,730,829	-		LU632_RS14260	0.37	+1.3
2,730,829	-		LU632_RS14260	0.37	-0.8
2,730,862	+		LU632_RS14260	0.42	-1.5
2,730,901	+		LU632_RS14260	0.48	+0.7
2,730,919	-		LU632_RS14260	0.51	-3.9
2,730,952	+		LU632_RS14260	0.56	+1.4
2,730,953	-		LU632_RS14260	0.56	-3.1
2,730,976	+		LU632_RS14260	0.59	+0.4
2,730,976	+		LU632_RS14260	0.59	+0.2
2,730,976	+		LU632_RS14260	0.59	-0.6
2,731,041	+		LU632_RS14260	0.69	+1.0
2,731,041	+		LU632_RS14260	0.69	+1.3
2,731,041	+		LU632_RS14260	0.69	+0.3
2,731,041	+		LU632_RS14260	0.69	+0.6
2,731,041	+		LU632_RS14260	0.69	-0.6
2,731,041	+		LU632_RS14260	0.69	+0.6
2,731,041	+		LU632_RS14260	0.69	+0.8
2,731,042	-		LU632_RS14260	0.70	+1.5
2,731,042	-		LU632_RS14260	0.70	+0.4
2,731,042	-		LU632_RS14260	0.70	+1.4
2,731,042	-		LU632_RS14260	0.70	-1.7
2,731,042	-		LU632_RS14260	0.70	-0.0
2,731,042	-		LU632_RS14260	0.70	-2.5
2,731,042	-		LU632_RS14260	0.70	+0.0
2,731,042	-		LU632_RS14260	0.70	-0.6
2,731,043	+		LU632_RS14260	0.70	-1.7
2,731,043	+		LU632_RS14260	0.70	+0.7
2,731,044	-		LU632_RS14260	0.70	+1.2
2,731,044	-		LU632_RS14260	0.70	-1.8
2,731,044	-		LU632_RS14260	0.70	+0.8
2,731,046	-		LU632_RS14260	0.70	+1.3
2,731,046	-		LU632_RS14260	0.70	-1.5
2,731,092	+		LU632_RS14260	0.77	-0.5
2,731,271	+				+1.6
2,731,272	-				+2.2
2,731,328	+				-1.2
2,731,397	-				-2.2
2,731,405	+				-1.6
2,731,441	+				+0.0
2,731,441	+				-0.8
2,731,441	+				-1.6
2,731,463	-				+1.0
2,731,466	+				+2.7
2,731,467	-				+0.3
2,731,467	-				+1.4