Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14130

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,708,567	+		LU632_RS14120	0.16	-0.2
2,708,567	+		LU632_RS14120	0.16	-0.6
2,708,568	-		LU632_RS14120	0.16	+0.4
2,708,568	-		LU632_RS14120	0.16	+0.0
2,708,568	-		LU632_RS14120	0.16	-0.2
2,708,568	-		LU632_RS14120	0.16	-1.9
2,708,655	+		LU632_RS14120	0.36	+3.9
2,708,684	-		LU632_RS14120	0.42	-1.4
2,708,890	+		LU632_RS14120	0.88	-1.3
2,708,890	+		LU632_RS14120	0.88	+1.6
2,708,890	+		LU632_RS14120	0.88	-1.4
2,708,891	-		LU632_RS14120	0.88	+0.2
2,708,891	-		LU632_RS14120	0.88	+0.2
2,708,896	-		LU632_RS14120	0.90	+2.9
2,708,901	-				+0.5
2,708,921	+				+1.0
2,708,922	-				-1.9
2,708,922	-				-1.3
2,708,925	+				+1.5
2,708,925	+				+0.7
2,708,961	+				-1.7
2,708,961	+				+1.4
2,708,961	+				-0.6
2,708,984	+				+0.9
2,708,985	-				+0.3
2,708,985	-				-0.9
2,709,087	-		LU632_RS14125	0.46	-0.0
2,709,111	+		LU632_RS14125	0.54	-2.4
2,709,152	+		LU632_RS14125	0.69	-0.6
2,709,152	+		LU632_RS14125	0.69	+0.4
2,709,152	+		LU632_RS14125	0.69	-0.8
2,709,153	-		LU632_RS14125	0.69	+0.6
2,709,241	+				+0.1
2,709,241	+				+0.7
2,709,241	+				-0.7
2,709,242	-				+1.3
2,709,287	+				+0.8
2,709,288	-				+1.4
2,709,288	-				-1.6
2,709,290	+				-0.0
2,709,290	+				+1.0
2,709,291	-				-0.0
2,709,314	-				+0.2
2,709,353	+				+1.0
2,709,354	-				+0.4
2,709,368	-				+1.2
2,709,481	+	vsr	LU632_RS14130	0.27	-0.8
2,709,484	+	vsr	LU632_RS14130	0.28	-1.5
2,709,610	-	vsr	LU632_RS14130	0.55	-3.3
2,709,610	-	vsr	LU632_RS14130	0.55	+0.4
2,709,707	+	vsr	LU632_RS14130	0.75	-2.5
2,709,708	-	vsr	LU632_RS14130	0.76	-2.0
2,709,811	+				-0.3
2,709,812	-				+1.8
2,709,822	+				-1.8
2,709,842	-				-0.6
2,709,845	+				+0.1
2,709,845	+				+0.2
2,709,845	+				-0.9
2,709,845	+				+0.1
2,709,846	-				-2.8
2,709,846	-				+2.8
2,709,847	+				-0.6
2,709,848	-				-0.3
2,710,041	+				-0.7
2,710,230	+		LU632_RS14135	0.21	+2.3
2,710,261	+		LU632_RS14135	0.23	+0.4
2,710,262	-		LU632_RS14135	0.23	+0.3
2,710,329	+		LU632_RS14135	0.28	+0.1
2,710,330	-		LU632_RS14135	0.28	-0.6
2,710,330	-		LU632_RS14135	0.28	+0.2
2,710,330	-		LU632_RS14135	0.28	-1.2
2,710,333	+		LU632_RS14135	0.28	-0.1
2,710,333	+		LU632_RS14135	0.28	-0.2
2,710,334	-		LU632_RS14135	0.28	-2.0
2,710,334	-		LU632_RS14135	0.28	+1.6
2,710,334	-		LU632_RS14135	0.28	+1.0
2,710,336	-		LU632_RS14135	0.29	+0.1
2,710,336	-		LU632_RS14135	0.29	+0.4
2,710,341	+		LU632_RS14135	0.29	+4.0
2,710,341	+		LU632_RS14135	0.29	-1.7
2,710,342	-		LU632_RS14135	0.29	-1.6
2,710,368	+		LU632_RS14135	0.31	-1.6
2,710,368	+		LU632_RS14135	0.31	+1.0
2,710,368	+		LU632_RS14135	0.31	+0.9
2,710,368	+		LU632_RS14135	0.31	+1.5
2,710,368	+		LU632_RS14135	0.31	+0.9
2,710,369	-		LU632_RS14135	0.31	+1.4
2,710,369	-		LU632_RS14135	0.31	-1.3
2,710,425	+		LU632_RS14135	0.35	+0.8
2,710,694	-		LU632_RS14135	0.55	-0.2