Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13880

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,661,171	-		LU632_RS13870	0.35	+1.5
2,661,171	-		LU632_RS13870	0.35	-0.6
2,661,323	+		LU632_RS13870	0.68	-1.6
2,661,424	+		LU632_RS13870	0.90	+0.3
2,661,425	-				+0.9
2,661,433	-				+2.2
2,661,434	+				+1.4
2,661,435	+				+0.7
2,661,463	+				+0.1
2,661,660	-		LU632_RS13875	0.58	-0.2
2,661,897	-				+0.3
2,662,095	-				-1.2
2,662,305	+		LU632_RS13880	0.58	-1.0
2,662,305	+		LU632_RS13880	0.58	-1.7
2,662,305	+		LU632_RS13880	0.58	-2.6
2,662,394	+		LU632_RS13880	0.79	+0.8
2,662,682	+		LU632_RS13885	0.81	+1.2
2,662,683	-		LU632_RS13885	0.81	+3.4
2,662,683	-		LU632_RS13885	0.81	-0.6
2,662,824	-		LU632_RS13890	0.42	+0.1
2,662,826	-		LU632_RS13890	0.43	-2.3
2,662,899	+		LU632_RS13890	0.80	-0.8
2,662,899	+		LU632_RS13890	0.80	-1.0
2,662,899	+		LU632_RS13890	0.80	-1.0
2,662,900	-		LU632_RS13890	0.81	+1.9
2,662,900	-		LU632_RS13890	0.81	-1.5
2,662,900	-		LU632_RS13890	0.81	-0.6
2,662,900	-		LU632_RS13890	0.81	+2.0
2,662,941	+				-0.5
2,662,942	-				+0.4
2,663,144	+				-3.0
2,663,145	-				+0.4
2,663,258	-				-1.6
2,663,259	+				+4.9
2,663,260	-				+4.9