Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13835

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,653,947	-		LU632_RS13825	0.87	+0.1
2,653,970	+		LU632_RS13825	0.88	+0.9
2,653,970	+		LU632_RS13825	0.88	-1.9
2,654,075	-				+1.8
2,654,075	-				+1.7
2,654,149	-				-1.2
2,654,149	-				-1.2
2,654,149	-				-1.4
2,654,149	-				-1.7
2,654,209	+				-0.3
2,654,209	+				+0.4
2,654,210	-				-1.3
2,654,213	+				-1.2
2,654,213	+				-2.8
2,654,213	+				-0.6
2,654,214	-				-1.4
2,654,214	-				-0.1
2,654,313	+				-1.0
2,654,313	+				-1.6
2,654,313	+				+0.2
2,654,314	-				-0.1
2,654,352	+				-2.6
2,654,353	-				+0.6
2,654,375	-				+0.2
2,654,472	+		LU632_RS13830	0.48	-0.3
2,654,473	-		LU632_RS13830	0.49	+1.0
2,654,516	+		LU632_RS13830	0.78	-0.0
2,654,551	+				+0.6
2,654,602	-				+0.6
2,654,657	-				-1.6
2,654,759	+				-2.2
2,654,793	-				+3.4
2,654,942	+				+1.1
2,655,006	+				-1.6
2,655,007	-				-0.4
2,655,127	-		LU632_RS13835	0.14	-0.6
2,655,174	+		LU632_RS13835	0.18	+0.4
2,655,175	-		LU632_RS13835	0.18	+1.1
2,655,229	-		LU632_RS13835	0.22	-0.3
2,655,237	-		LU632_RS13835	0.23	-3.8
2,655,349	+		LU632_RS13835	0.32	+0.1
2,655,499	+		LU632_RS13835	0.43	+0.4
2,655,500	-		LU632_RS13835	0.43	+0.7
2,655,500	-		LU632_RS13835	0.43	+0.4
2,655,507	-		LU632_RS13835	0.44	-0.0
2,655,507	-		LU632_RS13835	0.44	-1.3
2,655,534	-		LU632_RS13835	0.46	+1.0
2,655,534	-		LU632_RS13835	0.46	-0.7
2,655,662	-		LU632_RS13835	0.56	+1.3
2,655,662	-		LU632_RS13835	0.56	-2.1
2,655,962	-		LU632_RS13835	0.79	+0.7
2,655,967	-		LU632_RS13835	0.80	-0.0
2,655,967	-		LU632_RS13835	0.80	+0.7
2,656,015	-		LU632_RS13835	0.83	+1.9
2,656,230	+				-0.4
2,656,259	+				-0.8
2,656,388	+				+2.0
2,656,433	+				-1.8
2,656,433	+				+0.1
2,656,471	+				-0.2
2,656,471	+				+1.7
2,656,508	-				-1.9
2,656,518	+				+2.1
2,656,702	+	fliD	LU632_RS13840	0.14	-1.6
2,656,786	+	fliD	LU632_RS13840	0.20	+1.6
2,656,790	+	fliD	LU632_RS13840	0.20	-1.6
2,656,791	-	fliD	LU632_RS13840	0.20	+0.7
2,656,888	+	fliD	LU632_RS13840	0.27	-1.3
2,656,889	-	fliD	LU632_RS13840	0.27	-0.2
2,657,005	+	fliD	LU632_RS13840	0.35	+2.1
2,657,006	-	fliD	LU632_RS13840	0.35	-1.2
2,657,006	-	fliD	LU632_RS13840	0.35	-3.3
2,657,031	-	fliD	LU632_RS13840	0.37	+0.7
2,657,218	+	fliD	LU632_RS13840	0.50	+0.5