Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13700

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,613,399	+		LU632_RS13690	0.62	-1.9
2,613,400	-		LU632_RS13690	0.62	+0.9
2,613,440	+		LU632_RS13690	0.68	+3.4
2,613,442	+		LU632_RS13690	0.68	+0.4
2,613,443	-		LU632_RS13690	0.68	-2.6
2,613,515	-		LU632_RS13690	0.78	+1.1
2,613,576	-		LU632_RS13690	0.86	+0.4
2,613,576	-		LU632_RS13690	0.86	+0.2
2,613,576	-		LU632_RS13690	0.86	-0.9
2,613,578	-		LU632_RS13690	0.86	-0.6
2,613,608	+				-0.8
2,613,622	+				-0.7
2,613,623	-				-1.9
2,613,698	-				+2.6
2,613,762	+				+1.0
2,613,763	-				+2.7
2,613,763	-				-0.2
2,613,795	-				-1.3
2,613,801	-				-1.9
2,613,819	-				-2.6
2,613,843	-				-1.1
2,613,937	+		LU632_RS13695	0.13	-2.9
2,613,938	-		LU632_RS13695	0.14	+1.9
2,613,950	+		LU632_RS13695	0.16	-1.0
2,613,950	+		LU632_RS13695	0.16	-1.6
2,613,951	-		LU632_RS13695	0.17	-0.9
2,613,951	-		LU632_RS13695	0.17	+0.9
2,613,951	-		LU632_RS13695	0.17	-0.0
2,613,954	+		LU632_RS13695	0.17	-3.4
2,613,954	+		LU632_RS13695	0.17	+0.3
2,613,955	-		LU632_RS13695	0.17	-0.1
2,613,955	-		LU632_RS13695	0.17	-0.7
2,613,975	-		LU632_RS13695	0.22	-0.3
2,614,079	-		LU632_RS13695	0.45	+0.7
2,614,106	+		LU632_RS13695	0.51	-1.2
2,614,106	+		LU632_RS13695	0.51	-0.1
2,614,106	+		LU632_RS13695	0.51	+1.4
2,614,106	+		LU632_RS13695	0.51	-1.3
2,614,107	-		LU632_RS13695	0.51	+1.7
2,614,107	-		LU632_RS13695	0.51	+2.3
2,614,108	+		LU632_RS13695	0.52	+3.1
2,614,108	+		LU632_RS13695	0.52	+0.6
2,614,121	-		LU632_RS13695	0.55	+2.7
2,614,121	-		LU632_RS13695	0.55	-1.6
2,614,225	-		LU632_RS13695	0.78	+1.5
2,614,257	+		LU632_RS13695	0.85	+0.2
2,614,258	-		LU632_RS13695	0.85	-0.1
2,614,261	-		LU632_RS13695	0.86	-0.5
2,615,500	+				-0.8
2,615,528	+				-0.4
2,615,539	+				-1.2
2,615,608	+				+1.1
2,615,609	-				+1.4
2,615,639	+				-0.6
2,615,639	+				+1.0
2,615,687	-				+1.0
2,615,687	-				-2.2
2,615,699	-				+0.4
2,615,699	-				+1.1
2,615,699	-				-1.5
2,615,708	+				-0.6
2,615,708	+				+1.3
2,615,709	-				+1.8
2,615,710	+				+0.2
2,615,760	-				+0.7
2,615,819	+				-0.6
2,615,820	-				+3.0
2,615,826	-				-2.2
2,615,826	-				-1.3
2,615,826	-				-2.7
2,615,826	-				+0.4
2,615,874	+				-0.5
2,615,932	-				+2.8
2,615,932	-				-1.2
2,616,332	+		LU632_RS13705	0.42	-0.9
2,616,366	-		LU632_RS13705	0.45	+0.2
2,616,413	-		LU632_RS13705	0.49	-0.5
2,616,413	-		LU632_RS13705	0.49	-0.0
2,616,418	-		LU632_RS13705	0.49	-0.8
2,616,439	+		LU632_RS13705	0.51	+0.3
2,616,439	+		LU632_RS13705	0.51	+0.6