Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12925

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,464,795	+				+1.0
2,464,801	-				-1.4
2,464,857	+				-0.6
2,464,858	-				-1.0
2,465,258	+	rssB	LU632_RS12925	0.38	-1.7
2,465,387	+	rssB	LU632_RS12925	0.50	+0.4
2,465,388	-	rssB	LU632_RS12925	0.51	+0.4
2,465,417	+	rssB	LU632_RS12925	0.53	-1.6
2,465,567	+	rssB	LU632_RS12925	0.68	-1.6
2,465,787	-				-2.7
2,465,970	-				-1.4
2,465,971	+				-1.7
2,465,971	+				+1.0
2,465,972	-				-0.6
2,465,972	-				+1.4
2,465,972	-				-0.3
2,465,972	-				-0.3
2,465,972	-				-1.6
2,465,972	-				-0.2
2,465,973	+				+1.6
2,465,974	-				-0.2
2,465,974	-				+0.2
2,465,974	-				+1.2
2,465,974	-				+0.6
2,466,010	+				+0.3
2,466,020	-				+1.6
2,466,020	-				+0.8
2,466,139	-	rssA	LU632_RS12930	0.17	+0.4
2,466,187	+	rssA	LU632_RS12930	0.22	+2.0
2,466,187	+	rssA	LU632_RS12930	0.22	+0.8
2,466,187	+	rssA	LU632_RS12930	0.22	+1.4
2,466,188	-	rssA	LU632_RS12930	0.22	+0.4
2,466,188	-	rssA	LU632_RS12930	0.22	+0.9
2,466,188	-	rssA	LU632_RS12930	0.22	-0.4
2,466,302	+	rssA	LU632_RS12930	0.35	-0.2
2,466,303	-	rssA	LU632_RS12930	0.35	+0.4
2,466,303	-	rssA	LU632_RS12930	0.35	+2.0
2,466,303	-	rssA	LU632_RS12930	0.35	+0.7
2,466,493	+	rssA	LU632_RS12930	0.57	-0.1
2,466,493	+	rssA	LU632_RS12930	0.57	-0.4
2,466,494	-	rssA	LU632_RS12930	0.57	-0.1
2,466,494	-	rssA	LU632_RS12930	0.57	-2.4
2,466,681	-	rssA	LU632_RS12930	0.78	-0.3
2,466,731	+	rssA	LU632_RS12930	0.84	+1.7
2,466,732	-	rssA	LU632_RS12930	0.84	+3.0
2,466,732	-	rssA	LU632_RS12930	0.84	-2.9
2,466,732	-	rssA	LU632_RS12930	0.84	+1.0
2,466,798	+				+0.6
2,466,798	+				-0.7
2,466,799	-				+0.0
2,466,802	+				-3.4