Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12340

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,345,540	+				-1.6
2,345,550	+				+3.6
2,345,554	+				+4.9
2,345,620	+				-0.6
2,345,620	+				+0.4
2,345,634	-				-0.5
2,345,885	+				-2.6
2,345,920	+				-0.2
2,345,921	-				+2.5
2,346,032	-				-1.6
2,346,086	+				-1.1
2,346,086	+				+0.3
2,346,086	+				-0.0
2,346,087	-				-2.8
2,346,087	-				-0.7
2,346,088	+				-0.7
2,346,088	+				+1.0
2,346,089	-				+1.0
2,346,133	+				-1.9
2,346,134	-				+0.6
2,346,134	-				-0.7
2,346,235	-				+0.8
2,346,247	-				-0.5
2,346,250	-				-2.5
2,346,508	-				+0.7
2,346,614	-				-4.0
2,346,668	-				-0.2
2,346,691	+		LU632_RS12340	0.11	+0.2
2,346,691	+		LU632_RS12340	0.11	+0.5
2,346,692	-		LU632_RS12340	0.11	+1.4
2,346,692	-		LU632_RS12340	0.11	-0.2
2,346,692	-		LU632_RS12340	0.11	-0.4
2,346,770	+		LU632_RS12340	0.16	+0.7
2,346,770	+		LU632_RS12340	0.16	-1.2
2,346,771	-		LU632_RS12340	0.16	+1.7
2,346,771	-		LU632_RS12340	0.16	+0.5
2,346,970	+		LU632_RS12340	0.29	+0.4
2,347,020	+		LU632_RS12340	0.33	+2.4
2,347,020	+		LU632_RS12340	0.33	+2.5
2,347,021	-		LU632_RS12340	0.33	-1.1
2,347,022	+		LU632_RS12340	0.33	-0.3
2,347,022	+		LU632_RS12340	0.33	-1.2
2,347,022	+		LU632_RS12340	0.33	-2.9
2,347,025	+		LU632_RS12340	0.33	+1.8
2,347,070	+		LU632_RS12340	0.36	+4.6
2,347,137	-		LU632_RS12340	0.40	-3.3
2,347,137	-		LU632_RS12340	0.40	-1.8
2,347,244	+		LU632_RS12340	0.47	-1.2
2,347,273	+		LU632_RS12340	0.49	+2.1
2,347,325	+		LU632_RS12340	0.53	+1.2
2,347,338	-		LU632_RS12340	0.54	-0.6
2,347,384	+		LU632_RS12340	0.57	-2.1
2,347,470	+		LU632_RS12340	0.62	-0.1
2,347,471	-		LU632_RS12340	0.62	-1.0
2,347,471	-		LU632_RS12340	0.62	+4.6
2,347,552	+		LU632_RS12340	0.68	-0.6
2,347,552	+		LU632_RS12340	0.68	-2.4
2,347,553	-		LU632_RS12340	0.68	-0.9
2,347,664	+		LU632_RS12340	0.75	-0.1
2,347,664	+		LU632_RS12340	0.75	+2.6
2,347,719	-		LU632_RS12340	0.79	+0.6
2,347,901	+				-0.2
2,347,901	+				+0.7
2,347,902	-				+0.2
2,347,939	+				-0.9
2,347,987	-				-1.2
2,347,988	+				-0.0
2,347,988	+				+1.6
2,347,989	-				+0.1
2,348,057	+				-0.7
2,348,064	-				+1.0
2,348,119	-				+3.0
2,348,178	+				-0.6
2,348,178	+				+0.8
2,348,178	+				-0.6
2,348,179	-				-3.3
2,348,179	-				-1.9
2,348,179	-				-0.1
2,348,179	-				-1.7
2,348,179	-				+1.0
2,348,183	-				+1.7
2,348,194	+				-2.2
2,348,194	+				-0.1
2,348,195	-				+0.7
2,348,286	+				+3.4
2,348,471	+				-2.3
2,348,477	+				+1.7
2,348,477	+				-0.8
2,348,478	-				-0.7
2,348,525	+				+0.9
2,348,578	-				+3.4
2,348,612	+				-3.3
2,348,657	+				+1.4
2,348,658	-				+0.0
2,348,658	-				-1.9
2,348,670	+				-0.2
2,348,670	+				+0.2
2,348,670	+				+0.8
2,348,787	-				+0.9
2,348,805	+				+1.3
2,348,823	+				-2.1
2,348,823	+				+2.4
2,348,824	-				+0.1
2,348,824	-				+0.6
2,348,910	+		LU632_RS12345	0.54	+0.9
2,348,910	+		LU632_RS12345	0.54	+0.6
2,348,911	-		LU632_RS12345	0.54	+1.2
2,348,911	-		LU632_RS12345	0.54	+0.2
2,348,911	-		LU632_RS12345	0.54	+0.8
2,348,914	+		LU632_RS12345	0.56	-0.2
2,348,914	+		LU632_RS12345	0.56	+2.9
2,348,914	+		LU632_RS12345	0.56	+0.0
2,348,915	-		LU632_RS12345	0.56	-1.2
2,348,915	-		LU632_RS12345	0.56	-1.2