Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12130

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,301,257	-				-0.5
2,301,265	+				+0.1
2,301,265	+				+3.7
2,301,266	-				+0.8
2,301,266	-				+0.8
2,301,266	-				+0.5
2,301,266	-				+0.0
2,301,266	-				+1.2
2,301,284	+				-0.4
2,301,285	-				-1.4
2,301,285	-				+0.4
2,301,286	+				+0.8
2,301,287	-				+0.0
2,301,289	+				-2.4
2,301,289	+				-0.7
2,301,289	+				-1.6
2,301,290	-				-0.9
2,301,290	-				-1.0
2,301,290	-				-0.5
2,301,294	+				-0.2
2,301,295	-				-1.9
2,301,374	-				+0.2
2,301,374	-				+0.6
2,301,374	-				+1.8
2,301,374	-				+2.6
2,301,374	-				+0.5
2,301,441	+				-0.3
2,301,441	+				+0.1
2,301,445	+				-2.4
2,301,445	+				+1.7
2,301,445	+				+1.0
2,301,446	-				+2.3
2,301,446	-				-1.6
2,301,446	-				+0.7
2,301,446	-				-2.6
2,301,449	+				+0.6
2,301,450	-				+0.3
2,301,524	+				-2.8
2,301,568	+				-0.1
2,301,569	-				+0.4
2,301,569	-				+1.1
2,301,581	+				-0.6
2,301,581	+				-2.9
2,301,632	-				-1.0
2,301,632	-				+0.5
2,301,632	-				-1.0
2,301,632	-				-2.6
2,301,644	-				-0.0
2,301,644	-				+0.4
2,301,644	-				-0.6
2,301,644	-				+0.7
2,301,668	-				+1.3
2,301,682	+				+0.7
2,301,682	+				-1.2
2,301,683	-				+1.1
2,301,699	+				+0.5
2,301,699	+				+0.5
2,301,700	-				+1.2
2,301,700	-				+0.9
2,301,700	-				+0.5
2,301,700	-				-0.0
2,301,700	-				-0.4
2,301,700	-				+0.7
2,301,710	-				+0.7
2,301,715	-				-0.3
2,301,715	-				+0.0
2,301,752	+				-2.5
2,301,763	-				-0.7
2,301,763	-				-1.9
2,301,813	+		LU632_RS12125	0.19	+1.2
2,301,814	-		LU632_RS12125	0.19	-0.5
2,301,881	+		LU632_RS12125	0.32	+4.0
2,301,881	+		LU632_RS12125	0.32	-2.6
2,301,882	-		LU632_RS12125	0.32	+0.3
2,301,882	-		LU632_RS12125	0.32	+0.8
2,302,043	+		LU632_RS12125	0.63	+1.5
2,302,043	+		LU632_RS12125	0.63	+1.0
2,302,043	+		LU632_RS12125	0.63	-0.2
2,302,043	+		LU632_RS12125	0.63	+2.6
2,302,044	-		LU632_RS12125	0.63	+0.4
2,302,044	-		LU632_RS12125	0.63	+0.3
2,302,044	-		LU632_RS12125	0.63	-0.2
2,302,044	-		LU632_RS12125	0.63	+2.8
2,302,052	+		LU632_RS12125	0.65	+0.5
2,302,053	-		LU632_RS12125	0.65	-1.7
2,302,063	+		LU632_RS12125	0.67	+0.7
2,302,063	+		LU632_RS12125	0.67	+0.1
2,302,063	+		LU632_RS12125	0.67	+0.1
2,302,063	+		LU632_RS12125	0.67	+1.5
2,302,063	+		LU632_RS12125	0.67	+0.3
2,302,063	+		LU632_RS12125	0.67	+2.0
2,302,063	+		LU632_RS12125	0.67	-2.5
2,302,063	+		LU632_RS12125	0.67	+0.1
2,302,063	+		LU632_RS12125	0.67	+1.1
2,302,063	+		LU632_RS12125	0.67	+0.8
2,302,064	-		LU632_RS12125	0.67	-1.6
2,302,064	-		LU632_RS12125	0.67	+1.2
2,302,064	-		LU632_RS12125	0.67	+1.5
2,302,064	-		LU632_RS12125	0.67	-0.6
2,302,064	-		LU632_RS12125	0.67	+0.6
2,302,064	-		LU632_RS12125	0.67	+0.3
2,302,091	-		LU632_RS12125	0.72	+1.6
2,302,091	-		LU632_RS12125	0.72	+1.1
2,302,206	+				+1.2
2,302,206	+				+0.5
2,302,207	-				+1.0
2,302,208	+				-0.3
2,302,208	+				+0.7
2,302,208	+				+0.4
2,302,208	+				+0.5
2,302,208	+				+2.8
2,302,208	+				+0.4
2,302,208	+				+1.1
2,302,208	+				-0.1
2,302,208	+				+0.4
2,302,208	+				+0.6
2,302,208	+				+1.0
2,302,208	+				+0.0
2,302,208	+				-2.6
2,302,209	+				+0.4
2,302,209	-				-0.0
2,302,209	-				+0.0
2,302,209	-				+0.2
2,302,209	-				+0.6
2,302,209	-				+0.1
2,302,209	-				+1.4
2,302,209	-				+0.8
2,302,209	-				-0.1
2,302,209	-				+0.1
2,302,214	+				+0.6
2,302,227	-				+0.7
2,302,248	+		LU632_RS12130	0.19	-1.0
2,302,249	-		LU632_RS12130	0.20	-0.6
2,302,249	-		LU632_RS12130	0.20	-1.4
2,302,281	+		LU632_RS12130	0.45	+1.4
2,302,281	+		LU632_RS12130	0.45	+0.8
2,302,281	+		LU632_RS12130	0.45	+2.3
2,302,282	-		LU632_RS12130	0.46	-0.6
2,302,282	-		LU632_RS12130	0.46	+1.9
2,302,301	+		LU632_RS12130	0.61	-2.2
2,302,302	+		LU632_RS12130	0.62	-1.6
2,302,326	+		LU632_RS12130	0.81	-0.2
2,302,326	+		LU632_RS12130	0.81	-3.3
2,302,424	-				+4.2
2,302,438	-				-1.8
2,302,438	-				-0.3
2,302,488	+				+0.5
2,302,488	+				+0.7