Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11470

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,189,326	+		LU632_RS11465	0.50	+0.8
2,189,327	-		LU632_RS11465	0.50	-2.6
2,189,343	+		LU632_RS11465	0.51	-0.3
2,189,344	-		LU632_RS11465	0.51	-1.9
2,189,511	-		LU632_RS11465	0.62	+0.9
2,189,511	-		LU632_RS11465	0.62	+1.8
2,189,540	+		LU632_RS11465	0.64	+1.0
2,189,540	+		LU632_RS11465	0.64	-0.1
2,189,540	+		LU632_RS11465	0.64	+1.7
2,189,541	-		LU632_RS11465	0.64	+0.4
2,189,747	+		LU632_RS11465	0.78	-1.6
2,189,748	-		LU632_RS11465	0.78	-0.5
2,189,751	+		LU632_RS11465	0.78	+1.2
2,189,770	+		LU632_RS11465	0.79	-0.7
2,189,829	+		LU632_RS11465	0.83	+1.4
2,189,830	-		LU632_RS11465	0.84	-1.6
2,189,833	+		LU632_RS11465	0.84	-0.0
2,189,833	+		LU632_RS11465	0.84	+1.4
2,189,834	-		LU632_RS11465	0.84	+0.8
2,189,834	-		LU632_RS11465	0.84	+1.4
2,189,852	-		LU632_RS11465	0.85	-0.1
2,189,955	+				-1.2
2,190,156	-				-1.1
2,190,186	-				-0.7
2,190,202	+				-3.4
2,190,202	-				-1.2
2,190,202	-				+0.7
2,190,203	+				-0.7
2,190,203	+				-2.2
2,190,203	+				+1.2
2,190,203	+				+1.0
2,190,204	-				+1.8
2,190,204	-				-2.6
2,190,204	-				-4.5
2,190,243	+				+4.4
2,190,288	+	asr	LU632_RS11470	0.10	-1.7
2,190,305	-	asr	LU632_RS11470	0.17	-1.8
2,190,416	-	asr	LU632_RS11470	0.64	-2.6
2,190,592	+				-0.7
2,190,592	+				-1.1
2,190,592	+				-1.9
2,190,633	-				-0.1
2,190,725	+				-0.6
2,190,725	+				+2.4
2,190,725	+				-0.2
2,190,726	-				+0.1
2,190,730	-				-0.0
2,190,804	+				+0.4
2,190,805	-				-1.2
2,190,901	+		LU632_RS11475	0.15	-1.5
2,190,941	-		LU632_RS11475	0.19	-2.8
2,190,967	+		LU632_RS11475	0.23	-1.0
2,191,101	-		LU632_RS11475	0.39	-0.1
2,191,177	+		LU632_RS11475	0.48	+2.1
2,191,222	-		LU632_RS11475	0.54	+1.1
2,191,240	+		LU632_RS11475	0.56	-0.1
2,191,363	+		LU632_RS11475	0.71	+0.4
2,191,372	+		LU632_RS11475	0.72	-0.3
2,191,479	+		LU632_RS11475	0.85	-0.6
2,191,479	+		LU632_RS11475	0.85	-1.9