Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11420

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
2,177,364	-				+2.9
2,177,391	+				+2.6
2,177,391	+				+0.4
2,177,414	-				+0.3
2,177,466	-				+0.8
2,177,486	+				-1.5
2,177,486	+				+1.7
2,177,487	+				-2.8
2,177,608	+				+1.3
2,177,609	+				-2.8
2,177,634	-				-1.2
2,177,676	-				-1.6
2,177,676	-				+3.5
2,177,676	-				-1.2
2,177,682	-				+1.2
2,177,689	+				+1.5
2,177,689	+				-2.2
2,177,690	-				-0.9
2,177,694	-				+1.5
2,177,749	-				-1.5
2,177,757	+				-0.0
2,177,809	-				-3.4
2,177,858	-		LU632_RS11415	0.26	+0.1
2,177,897	-		LU632_RS11415	0.42	-3.3
2,177,960	-		LU632_RS11415	0.69	-0.3
2,177,967	-		LU632_RS11415	0.72	-0.6
2,177,967	-		LU632_RS11415	0.72	-2.4
2,178,082	-				-1.4
2,178,237	+				-2.1
2,178,241	+				+0.8
2,178,576	-		LU632_RS11420	0.31	-1.2
2,178,670	+		LU632_RS11420	0.44	-2.8
2,178,778	-		LU632_RS11420	0.58	+1.2
2,179,575	+	uspE	LU632_RS11425	0.11	-1.2
2,179,576	-	uspE	LU632_RS11425	0.11	-1.6
2,179,677	+	uspE	LU632_RS11425	0.21	-0.6
2,179,735	-	uspE	LU632_RS11425	0.28	-0.6
2,179,735	-	uspE	LU632_RS11425	0.28	+1.5
2,179,788	-	uspE	LU632_RS11425	0.33	+1.9
2,180,034	-	uspE	LU632_RS11425	0.59	-2.4
2,180,091	+	uspE	LU632_RS11425	0.65	+3.1