Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10830

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS10825 and LU632_RS10830 are separated by 128 nucleotidesLU632_RS10830 and nadE are separated by 125 nucleotides LU632_RS10825: LU632_RS10825 - IS256 family transposase, at 2,065,345 to 2,066,552 _RS10825 LU632_RS10830: LU632_RS10830 - helix-turn-helix domain-containing protein, at 2,066,681 to 2,067,700 _RS10830 LU632_RS10835: nadE - ammonia-dependent NAD(+) synthetase, at 2,067,826 to 2,068,653 nadE Position (kb) 2066 2067 2068Strain fitness (log2 ratio) -2 -1 0 1at 2066.565 kb on + strandat 2067.375 kb on - strand, within LU632_RS10830at 2068.698 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
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2,066,565 + +0.9
2,067,375 - LU632_RS10830 0.68 -0.0
2,068,698 + -2.1

Or see this region's nucleotide sequence