Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10340

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,975,312	+		LU632_RS10335	0.41	-3.2
1,975,312	+		LU632_RS10335	0.41	+0.5
1,975,316	+		LU632_RS10335	0.41	+0.6
1,975,317	-		LU632_RS10335	0.41	-0.9
1,975,317	-		LU632_RS10335	0.41	-3.8
1,975,336	+		LU632_RS10335	0.43	+1.1
1,975,338	+		LU632_RS10335	0.43	-2.0
1,975,338	+		LU632_RS10335	0.43	-1.9
1,975,339	-		LU632_RS10335	0.43	+0.7
1,975,422	+		LU632_RS10335	0.50	+0.8
1,975,422	+		LU632_RS10335	0.50	-0.5
1,975,463	+		LU632_RS10335	0.54	-0.1
1,975,463	+		LU632_RS10335	0.54	-0.6
1,975,463	+		LU632_RS10335	0.54	-1.1
1,975,465	+		LU632_RS10335	0.54	+1.3
1,975,626	-		LU632_RS10335	0.67	-1.1
1,975,629	+		LU632_RS10335	0.67	+0.2
1,975,629	+		LU632_RS10335	0.67	+1.2
1,975,629	+		LU632_RS10335	0.67	+0.0
1,975,630	-		LU632_RS10335	0.67	+0.8
1,975,677	+		LU632_RS10335	0.71	-0.3
1,975,742	+		LU632_RS10335	0.77	-1.1
1,975,761	-		LU632_RS10335	0.78	+0.5
1,975,846	+		LU632_RS10335	0.85	+0.6
1,975,922	+				-0.2
1,975,922	+				-0.1
1,976,066	-				+0.2
1,976,068	-				-0.3
1,976,154	+				-0.7
1,976,155	-				+0.8
1,976,224	+				+1.1
1,976,257	+				+0.9
1,976,257	+				-0.5
1,976,257	+				-1.1
1,976,257	+				-3.4
1,976,257	+				+0.5
1,976,272	+				-0.7
1,976,388	-	pyrC	LU632_RS10340	0.13	+0.2
1,976,453	-	pyrC	LU632_RS10340	0.19	-1.8
1,976,613	+	pyrC	LU632_RS10340	0.35	-1.7
1,976,613	+	pyrC	LU632_RS10340	0.35	-0.1
1,976,614	-	pyrC	LU632_RS10340	0.35	+0.5
1,976,667	+	pyrC	LU632_RS10340	0.40	-3.2
1,976,668	-	pyrC	LU632_RS10340	0.40	-0.5
1,976,668	-	pyrC	LU632_RS10340	0.40	-2.1
1,976,685	+	pyrC	LU632_RS10340	0.41	-1.1
1,976,686	-	pyrC	LU632_RS10340	0.42	-1.7
1,976,686	-	pyrC	LU632_RS10340	0.42	+0.5
1,976,686	-	pyrC	LU632_RS10340	0.42	-1.8
1,976,738	+	pyrC	LU632_RS10340	0.47	-1.7
1,976,739	-	pyrC	LU632_RS10340	0.47	-2.1
1,976,739	-	pyrC	LU632_RS10340	0.47	-2.4
1,976,764	-	pyrC	LU632_RS10340	0.49	-1.2
1,976,764	-	pyrC	LU632_RS10340	0.49	-0.5
1,976,782	+	pyrC	LU632_RS10340	0.51	-2.8
1,976,783	-	pyrC	LU632_RS10340	0.51	-2.3
1,976,783	-	pyrC	LU632_RS10340	0.51	-2.3
1,976,803	+	pyrC	LU632_RS10340	0.53	-0.9
1,976,850	+	pyrC	LU632_RS10340	0.57	-0.7
1,976,856	+	pyrC	LU632_RS10340	0.58	-3.4
1,976,856	+	pyrC	LU632_RS10340	0.58	-2.1
1,976,941	-	pyrC	LU632_RS10340	0.66	-1.5
1,976,984	+	pyrC	LU632_RS10340	0.70	-1.2
1,976,986	+	pyrC	LU632_RS10340	0.70	-2.9
1,976,986	+	pyrC	LU632_RS10340	0.70	-1.5
1,976,987	-	pyrC	LU632_RS10340	0.70	-1.0
1,977,015	+	pyrC	LU632_RS10340	0.73	-1.1
1,977,060	-	pyrC	LU632_RS10340	0.77	-0.5
1,977,070	+	pyrC	LU632_RS10340	0.78	+2.9
1,977,108	+	pyrC	LU632_RS10340	0.82	-1.2
1,977,202	-				-0.7
1,977,246	+				-2.5
1,977,246	+				-2.0
1,977,298	-				-0.5
1,977,353	+				-1.7
1,977,353	+				-0.9
1,977,354	-				-0.5
1,977,385	-				+0.2
1,977,461	+				-0.9
1,977,573	-		LU632_RS10345	0.21	-1.5
1,977,578	-		LU632_RS10345	0.22	+5.2
1,977,651	+		LU632_RS10345	0.35	+2.3
1,977,651	+		LU632_RS10345	0.35	+1.2
1,977,675	+		LU632_RS10345	0.39	+0.8
1,977,679	+		LU632_RS10345	0.40	-1.2
1,977,679	+		LU632_RS10345	0.40	+0.7
1,977,683	+		LU632_RS10345	0.41	+0.4
1,977,684	-		LU632_RS10345	0.41	-2.1
1,977,702	-		LU632_RS10345	0.44	-1.1
1,977,764	+		LU632_RS10345	0.55	-1.5
1,977,764	+		LU632_RS10345	0.55	-1.5
1,977,765	-		LU632_RS10345	0.55	-0.5
1,977,767	+		LU632_RS10345	0.56	+1.0
1,977,768	-		LU632_RS10345	0.56	-0.6
1,977,858	+		LU632_RS10345	0.72	+0.2
1,977,858	+		LU632_RS10345	0.72	+1.0
1,977,858	+		LU632_RS10345	0.72	-0.1
1,977,859	-		LU632_RS10345	0.72	+3.6
1,977,938	+		LU632_RS10345	0.86	+0.7
1,978,020	-				-1.4
1,978,067	+				-0.3
1,978,068	-				-1.8
1,978,144	+				-0.5
1,978,145	-				-0.3
1,978,148	-				+2.8
1,978,174	+				+1.1
1,978,193	+				+0.7
1,978,193	+				+2.2
1,978,195	+				+0.5
1,978,214	+				+1.5
1,978,231	-				-0.6
1,978,240	+				-0.3
1,978,268	-				-1.1