Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10240 and LU632_RS10245 are separated by 45 nucleotides LU632_RS10245 and LU632_RS10250 are separated by 535 nucleotides LU632_RS10250 and LU632_RS10255 are separated by 6 nucleotides LU632_RS10255 and LU632_RS10260 are separated by 70 nucleotides LU632_RS10260 and mdoC are separated by 3 nucleotides
LU632_RS10240: LU632_RS10240 - hypothetical protein, at 1,957,958 to 1,958,125
_RS10240
LU632_RS10245: LU632_RS10245 - hypothetical protein, at 1,958,171 to 1,958,338
_RS10245
LU632_RS10250: LU632_RS10250 - phospholipase D family protein, at 1,958,874 to 1,959,059
_RS10250
LU632_RS10255: LU632_RS10255 - transposase, at 1,959,066 to 1,959,347
_RS10255
LU632_RS10260: LU632_RS10260 - hypothetical protein, at 1,959,418 to 1,959,576
_RS10260
LU632_RS10265: mdoC - glucans biosynthesis protein MdoC, at 1,959,580 to 1,960,704
mdoC
Position (kb) 1958
1959
1960 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1958.146 kb on - strand at 1958.233 kb on + strand, within LU632_RS10245 at 1958.233 kb on + strand, within LU632_RS10245 at 1958.278 kb on + strand, within LU632_RS10245 at 1958.279 kb on - strand, within LU632_RS10245 at 1958.279 kb on - strand, within LU632_RS10245 at 1958.294 kb on - strand, within LU632_RS10245 at 1958.367 kb on + strand at 1958.367 kb on + strand at 1958.372 kb on - strand at 1958.379 kb on - strand at 1958.390 kb on + strand at 1958.441 kb on - strand at 1958.441 kb on - strand at 1958.466 kb on - strand at 1958.492 kb on - strand at 1958.492 kb on - strand at 1958.494 kb on + strand at 1958.495 kb on - strand at 1958.495 kb on - strand at 1958.495 kb on - strand at 1958.553 kb on + strand at 1958.567 kb on - strand at 1958.572 kb on - strand at 1958.582 kb on + strand at 1958.582 kb on + strand at 1958.586 kb on + strand at 1958.587 kb on - strand at 1958.587 kb on - strand at 1958.707 kb on + strand at 1958.733 kb on + strand at 1958.803 kb on + strand at 1958.804 kb on - strand at 1958.804 kb on - strand at 1958.834 kb on + strand at 1958.834 kb on + strand at 1958.941 kb on - strand, within LU632_RS10250 at 1959.160 kb on - strand, within LU632_RS10255 at 1959.380 kb on + strand at 1959.409 kb on - strand at 1959.438 kb on + strand, within LU632_RS10260 at 1959.594 kb on + strand at 1959.617 kb on - strand at 1959.622 kb on + strand at 1959.623 kb on - strand at 1959.716 kb on - strand, within mdoC at 1959.761 kb on + strand, within mdoC at 1959.762 kb on - strand, within mdoC at 1959.766 kb on - strand, within mdoC at 1959.987 kb on + strand, within mdoC at 1959.987 kb on + strand, within mdoC at 1959.988 kb on - strand, within mdoC at 1960.010 kb on + strand, within mdoC at 1960.054 kb on + strand, within mdoC
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,958,146 - +0.2 1,958,233 + LU632_RS10245 0.37 +0.1 1,958,233 + LU632_RS10245 0.37 +2.8 1,958,278 + LU632_RS10245 0.64 -3.1 1,958,279 - LU632_RS10245 0.64 +2.0 1,958,279 - LU632_RS10245 0.64 +1.0 1,958,294 - LU632_RS10245 0.73 -1.5 1,958,367 + -0.1 1,958,367 + -1.0 1,958,372 - -0.5 1,958,379 - +1.5 1,958,390 + -2.7 1,958,441 - +2.3 1,958,441 - -4.0 1,958,466 - +1.4 1,958,492 - +1.6 1,958,492 - +4.3 1,958,494 + -0.1 1,958,495 - -1.8 1,958,495 - +2.2 1,958,495 - +1.1 1,958,553 + -0.1 1,958,567 - -1.3 1,958,572 - -0.2 1,958,582 + +1.5 1,958,582 + -1.1 1,958,586 + -1.1 1,958,587 - -1.3 1,958,587 - +0.5 1,958,707 + -0.6 1,958,733 + -0.2 1,958,803 + -1.0 1,958,804 - +0.0 1,958,804 - +1.4 1,958,834 + -2.1 1,958,834 + +1.4 1,958,941 - LU632_RS10250 0.36 +1.3 1,959,160 - LU632_RS10255 0.33 -0.5 1,959,380 + -0.4 1,959,409 - -0.1 1,959,438 + LU632_RS10260 0.13 -3.2 1,959,594 + -0.8 1,959,617 - +0.1 1,959,622 + -0.5 1,959,623 - +0.5 1,959,716 - mdoC LU632_RS10265 0.12 -1.1 1,959,761 + mdoC LU632_RS10265 0.16 +0.8 1,959,762 - mdoC LU632_RS10265 0.16 -2.0 1,959,766 - mdoC LU632_RS10265 0.17 +1.7 1,959,987 + mdoC LU632_RS10265 0.36 -1.8 1,959,987 + mdoC LU632_RS10265 0.36 -0.4 1,959,988 - mdoC LU632_RS10265 0.36 -3.3 1,960,010 + mdoC LU632_RS10265 0.38 -0.4 1,960,054 + mdoC LU632_RS10265 0.42 -2.3
Or see this region's nucleotide sequence