Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10190

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,949,212	-		LU632_RS10180	0.64	+3.7
1,949,317	+		LU632_RS10180	0.81	-3.9
1,949,317	+		LU632_RS10180	0.81	+2.5
1,949,547	+				+0.4
1,949,552	+				-0.2
1,949,655	+				+1.1
1,949,657	+				-0.3
1,949,744	+		LU632_RS10185	0.37	+1.5
1,949,745	-		LU632_RS10185	0.37	+1.5
1,949,907	-				-1.1
1,949,970	-				-2.3
1,949,974	+				-2.3
1,950,026	+				+0.7
1,950,058	+				+1.4
1,950,096	+				-2.1
1,950,711	-	uvrY	LU632_RS10190	0.86	+2.1
1,950,862	+				-0.2
1,950,862	+				-0.1
1,950,862	+				+0.8
1,950,862	+				-0.4
1,950,862	+				+0.2
1,950,863	-				-2.3
1,950,863	-				-0.5
1,950,876	+				-1.8
1,950,882	-				+0.5
1,950,887	-				-0.8
1,950,895	-				-0.7
1,950,901	-				+0.8
1,950,901	-				+0.5
1,950,982	+	uvrC	LU632_RS10195	0.10	-0.8
1,950,982	+	uvrC	LU632_RS10195	0.10	+0.5
1,950,996	-	uvrC	LU632_RS10195	0.11	+1.2
1,951,008	+	uvrC	LU632_RS10195	0.12	-1.8
1,951,008	+	uvrC	LU632_RS10195	0.12	-0.5
1,951,008	+	uvrC	LU632_RS10195	0.12	-2.1
1,951,009	-	uvrC	LU632_RS10195	0.12	-2.3
1,951,028	+	uvrC	LU632_RS10195	0.13	-1.8
1,951,042	+	uvrC	LU632_RS10195	0.14	-0.9
1,951,042	+	uvrC	LU632_RS10195	0.14	-1.8
1,951,043	-	uvrC	LU632_RS10195	0.14	-1.3
1,951,066	+	uvrC	LU632_RS10195	0.15	-3.1
1,951,066	+	uvrC	LU632_RS10195	0.15	+5.7
1,951,073	+	uvrC	LU632_RS10195	0.15	+1.6
1,951,073	+	uvrC	LU632_RS10195	0.15	-0.1
1,951,074	-	uvrC	LU632_RS10195	0.15	+1.2
1,951,223	+	uvrC	LU632_RS10195	0.23	+3.3
1,951,293	-	uvrC	LU632_RS10195	0.27	+0.1
1,951,355	-	uvrC	LU632_RS10195	0.31	-3.3
1,951,355	-	uvrC	LU632_RS10195	0.31	-0.1
1,951,587	+	uvrC	LU632_RS10195	0.43	-1.8
1,951,587	+	uvrC	LU632_RS10195	0.43	-1.2
1,951,587	+	uvrC	LU632_RS10195	0.43	-2.8
1,951,587	+	uvrC	LU632_RS10195	0.43	+0.5
1,951,588	-	uvrC	LU632_RS10195	0.43	+0.3
1,951,588	-	uvrC	LU632_RS10195	0.43	+0.2
1,951,588	-	uvrC	LU632_RS10195	0.43	+1.3
1,951,588	-	uvrC	LU632_RS10195	0.43	+0.5
1,951,620	-	uvrC	LU632_RS10195	0.45	-0.7