Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09355

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS09345 and LU632_RS09350 are separated by 136 nucleotidesLU632_RS09350 and LU632_RS09355 are separated by 81 nucleotidesLU632_RS09355 and LU632_RS09360 overlap by 1 nucleotides LU632_RS09345: LU632_RS09345 - IS3 family transposase, at 1,769,606 to 1,770,770 _RS09345 LU632_RS09350: LU632_RS09350 - protein YohO, at 1,770,907 to 1,771,011 _RS09350 LU632_RS09355: LU632_RS09355 - DUF3833 domain-containing protein, at 1,771,093 to 1,771,626 _RS09355 LU632_RS09360: LU632_RS09360 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,771,626 to 1,772,861 _RS09360 Position (kb) 1771 1772Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1770.775 kb on + strandat 1770.837 kb on - strandat 1770.848 kb on + strandat 1770.849 kb on - strandat 1770.849 kb on - strandat 1770.929 kb on + strand, within LU632_RS09350at 1771.012 kb on - strandat 1771.027 kb on - strandat 1771.052 kb on - strandat 1771.052 kb on - strandat 1771.052 kb on - strandat 1771.229 kb on + strand, within LU632_RS09355at 1771.230 kb on - strand, within LU632_RS09355at 1771.230 kb on - strand, within LU632_RS09355at 1771.250 kb on - strand, within LU632_RS09355at 1771.559 kb on + strand, within LU632_RS09355at 1771.560 kb on - strand, within LU632_RS09355at 1771.560 kb on - strand, within LU632_RS09355at 1771.560 kb on - strand, within LU632_RS09355at 1771.564 kb on - strand, within LU632_RS09355at 1771.564 kb on - strand, within LU632_RS09355at 1771.699 kb on + strandat 1771.708 kb on + strandat 1771.777 kb on + strand, within LU632_RS09360at 1771.810 kb on + strand, within LU632_RS09360at 1771.845 kb on - strand, within LU632_RS09360at 1771.877 kb on + strand, within LU632_RS09360at 1771.878 kb on + strand, within LU632_RS09360at 1771.911 kb on - strand, within LU632_RS09360at 1772.039 kb on + strand, within LU632_RS09360at 1772.040 kb on - strand, within LU632_RS09360at 1772.040 kb on - strand, within LU632_RS09360at 1772.090 kb on - strand, within LU632_RS09360at 1772.174 kb on - strand, within LU632_RS09360at 1772.174 kb on - strand, within LU632_RS09360at 1772.174 kb on - strand, within LU632_RS09360at 1772.179 kb on + strand, within LU632_RS09360at 1772.179 kb on + strand, within LU632_RS09360at 1772.179 kb on + strand, within LU632_RS09360at 1772.180 kb on - strand, within LU632_RS09360at 1772.222 kb on - strand, within LU632_RS09360at 1772.365 kb on + strand, within LU632_RS09360at 1772.366 kb on - strand, within LU632_RS09360at 1772.410 kb on + strand, within LU632_RS09360at 1772.432 kb on - strand, within LU632_RS09360at 1772.432 kb on - strand, within LU632_RS09360at 1772.533 kb on - strand, within LU632_RS09360at 1772.537 kb on + strand, within LU632_RS09360at 1772.614 kb on + strand, within LU632_RS09360at 1772.614 kb on + strand, within LU632_RS09360at 1772.615 kb on - strand, within LU632_RS09360at 1772.615 kb on - strand, within LU632_RS09360at 1772.615 kb on - strand, within LU632_RS09360

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
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1,770,775 + -1.5
1,770,837 - -1.7
1,770,848 + +1.1
1,770,849 - +1.3
1,770,849 - -0.3
1,770,929 + LU632_RS09350 0.21 +1.0
1,771,012 - -2.1
1,771,027 - +1.9
1,771,052 - -1.1
1,771,052 - +1.6
1,771,052 - +0.9
1,771,229 + LU632_RS09355 0.25 +1.4
1,771,230 - LU632_RS09355 0.26 +1.3
1,771,230 - LU632_RS09355 0.26 +0.6
1,771,250 - LU632_RS09355 0.29 -1.8
1,771,559 + LU632_RS09355 0.87 +0.5
1,771,560 - LU632_RS09355 0.87 +1.8
1,771,560 - LU632_RS09355 0.87 -1.2
1,771,560 - LU632_RS09355 0.87 -0.5
1,771,564 - LU632_RS09355 0.88 -2.5
1,771,564 - LU632_RS09355 0.88 +0.5
1,771,699 + -0.2
1,771,708 + -0.8
1,771,777 + LU632_RS09360 0.12 +0.6
1,771,810 + LU632_RS09360 0.15 -1.1
1,771,845 - LU632_RS09360 0.18 -1.5
1,771,877 + LU632_RS09360 0.20 -2.3
1,771,878 + LU632_RS09360 0.20 +1.9
1,771,911 - LU632_RS09360 0.23 +1.4
1,772,039 + LU632_RS09360 0.33 +0.1
1,772,040 - LU632_RS09360 0.33 +1.2
1,772,040 - LU632_RS09360 0.33 -0.6
1,772,090 - LU632_RS09360 0.38 -2.8
1,772,174 - LU632_RS09360 0.44 -0.5
1,772,174 - LU632_RS09360 0.44 +0.2
1,772,174 - LU632_RS09360 0.44 +0.0
1,772,179 + LU632_RS09360 0.45 +0.4
1,772,179 + LU632_RS09360 0.45 +0.2
1,772,179 + LU632_RS09360 0.45 +1.0
1,772,180 - LU632_RS09360 0.45 -0.5
1,772,222 - LU632_RS09360 0.48 +0.5
1,772,365 + LU632_RS09360 0.60 +0.5
1,772,366 - LU632_RS09360 0.60 -1.5
1,772,410 + LU632_RS09360 0.63 +1.7
1,772,432 - LU632_RS09360 0.65 +1.5
1,772,432 - LU632_RS09360 0.65 -2.3
1,772,533 - LU632_RS09360 0.73 -0.3
1,772,537 + LU632_RS09360 0.74 -0.2
1,772,614 + LU632_RS09360 0.80 -1.1
1,772,614 + LU632_RS09360 0.80 +3.1
1,772,615 - LU632_RS09360 0.80 +0.6
1,772,615 - LU632_RS09360 0.80 -1.3
1,772,615 - LU632_RS09360 0.80 -1.5

Or see this region's nucleotide sequence