Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09335 and idi are separated by 140 nucleotides idi and LU632_RS09345 are separated by 90 nucleotides LU632_RS09345 and LU632_RS09350 are separated by 136 nucleotides LU632_RS09350 and LU632_RS09355 are separated by 81 nucleotides LU632_RS09355 and LU632_RS09360 overlap by 1 nucleotides
LU632_RS09335: LU632_RS09335 - methyl-accepting chemotaxis protein, at 1,766,922 to 1,768,817
_RS09335
LU632_RS09340: idi - isopentenyl-diphosphate Delta-isomerase, at 1,768,958 to 1,769,515
idi
LU632_RS09345: LU632_RS09345 - IS3 family transposase, at 1,769,606 to 1,770,770
_RS09345
LU632_RS09350: LU632_RS09350 - protein YohO, at 1,770,907 to 1,771,011
_RS09350
LU632_RS09355: LU632_RS09355 - DUF3833 domain-containing protein, at 1,771,093 to 1,771,626
_RS09355
LU632_RS09360: LU632_RS09360 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,771,626 to 1,772,861
_RS09360
Position (kb) 1769
1770
1771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1768.629 kb on - strand at 1768.629 kb on - strand at 1768.664 kb on + strand at 1768.693 kb on + strand at 1768.693 kb on + strand at 1768.856 kb on - strand at 1768.856 kb on - strand at 1768.929 kb on + strand at 1768.929 kb on + strand at 1768.929 kb on + strand at 1769.066 kb on + strand, within idi at 1769.117 kb on + strand, within idi at 1769.117 kb on + strand, within idi at 1769.118 kb on - strand, within idi at 1769.121 kb on + strand, within idi at 1769.121 kb on + strand, within idi at 1769.121 kb on + strand, within idi at 1769.122 kb on - strand, within idi at 1769.122 kb on - strand, within idi at 1769.122 kb on - strand, within idi at 1769.143 kb on + strand, within idi at 1769.187 kb on - strand, within idi at 1769.309 kb on + strand, within idi at 1769.309 kb on + strand, within idi at 1769.417 kb on + strand, within idi at 1769.418 kb on - strand, within idi at 1770.775 kb on + strand at 1770.837 kb on - strand at 1770.848 kb on + strand at 1770.849 kb on - strand at 1770.849 kb on - strand at 1770.929 kb on + strand, within LU632_RS09350 at 1771.012 kb on - strand at 1771.027 kb on - strand at 1771.052 kb on - strand at 1771.052 kb on - strand at 1771.052 kb on - strand at 1771.229 kb on + strand, within LU632_RS09355 at 1771.230 kb on - strand, within LU632_RS09355 at 1771.230 kb on - strand, within LU632_RS09355 at 1771.250 kb on - strand, within LU632_RS09355 at 1771.559 kb on + strand, within LU632_RS09355 at 1771.560 kb on - strand, within LU632_RS09355 at 1771.560 kb on - strand, within LU632_RS09355 at 1771.560 kb on - strand, within LU632_RS09355 at 1771.564 kb on - strand, within LU632_RS09355 at 1771.564 kb on - strand, within LU632_RS09355 at 1771.699 kb on + strand at 1771.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,768,629 - -0.5 1,768,629 - +0.7 1,768,664 + +3.3 1,768,693 + -2.1 1,768,693 + +0.4 1,768,856 - -0.1 1,768,856 - -0.5 1,768,929 + -1.1 1,768,929 + -1.3 1,768,929 + -0.1 1,769,066 + idi LU632_RS09340 0.19 +1.6 1,769,117 + idi LU632_RS09340 0.28 +0.3 1,769,117 + idi LU632_RS09340 0.28 -1.8 1,769,118 - idi LU632_RS09340 0.29 -1.5 1,769,121 + idi LU632_RS09340 0.29 -3.3 1,769,121 + idi LU632_RS09340 0.29 -2.2 1,769,121 + idi LU632_RS09340 0.29 +0.8 1,769,122 - idi LU632_RS09340 0.29 +4.1 1,769,122 - idi LU632_RS09340 0.29 +0.8 1,769,122 - idi LU632_RS09340 0.29 +0.6 1,769,143 + idi LU632_RS09340 0.33 -1.8 1,769,187 - idi LU632_RS09340 0.41 +1.0 1,769,309 + idi LU632_RS09340 0.63 -1.5 1,769,309 + idi LU632_RS09340 0.63 +1.1 1,769,417 + idi LU632_RS09340 0.82 -1.5 1,769,418 - idi LU632_RS09340 0.82 -2.3 1,770,775 + -1.5 1,770,837 - -1.7 1,770,848 + +1.1 1,770,849 - +1.3 1,770,849 - -0.3 1,770,929 + LU632_RS09350 0.21 +1.0 1,771,012 - -2.1 1,771,027 - +1.9 1,771,052 - -1.1 1,771,052 - +1.6 1,771,052 - +0.9 1,771,229 + LU632_RS09355 0.25 +1.4 1,771,230 - LU632_RS09355 0.26 +1.3 1,771,230 - LU632_RS09355 0.26 +0.6 1,771,250 - LU632_RS09355 0.29 -1.8 1,771,559 + LU632_RS09355 0.87 +0.5 1,771,560 - LU632_RS09355 0.87 +1.8 1,771,560 - LU632_RS09355 0.87 -1.2 1,771,560 - LU632_RS09355 0.87 -0.5 1,771,564 - LU632_RS09355 0.88 -2.5 1,771,564 - LU632_RS09355 0.88 +0.5 1,771,699 + -0.2 1,771,708 + -0.8
Or see this region's nucleotide sequence