Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09315

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,759,370	+		LU632_RS09305	0.78	+0.3
1,759,455	+		LU632_RS09305	0.88	+1.1
1,759,455	+		LU632_RS09305	0.88	-1.8
1,759,463	+		LU632_RS09305	0.89	-1.6
1,759,464	-		LU632_RS09305	0.89	-1.4
1,759,465	+		LU632_RS09305	0.89	-1.3
1,759,466	-		LU632_RS09305	0.89	+0.6
1,759,466	-		LU632_RS09305	0.89	+0.6
1,759,606	+				-0.5
1,759,607	-				-0.3
1,759,607	-				+1.0
1,759,669	+				-2.1
1,759,670	-				+0.3
1,759,670	-				-0.5
1,759,670	-				+0.5
1,759,718	+				+1.0
1,759,719	-				-1.3
1,759,722	+				-0.7
1,759,784	+				-3.2
1,759,789	+				-0.5
1,759,789	+				+0.7
1,759,790	-				-1.0
1,759,790	-				+0.5
1,759,806	+				+0.6
1,759,866	-				-2.3
1,759,866	-				+3.0
1,759,926	+				+2.5
1,760,098	+		LU632_RS09310	0.36	+2.7
1,760,129	-		LU632_RS09310	0.45	-1.2
1,760,129	-		LU632_RS09310	0.45	+1.5
1,760,144	+		LU632_RS09310	0.49	+0.5
1,760,144	+		LU632_RS09310	0.49	+0.5
1,760,145	-		LU632_RS09310	0.50	-1.5
1,760,145	-		LU632_RS09310	0.50	+0.9
1,760,235	-		LU632_RS09310	0.75	+0.5
1,760,250	+		LU632_RS09310	0.79	-0.5
1,760,250	+		LU632_RS09310	0.79	+3.7
1,760,251	-		LU632_RS09310	0.80	-2.1
1,761,618	+				+0.6
1,761,650	+				-0.2
1,761,726	-	dld	LU632_RS09320	0.11	-2.6
1,761,749	+	dld	LU632_RS09320	0.13	-2.3
1,761,750	-	dld	LU632_RS09320	0.13	-1.8
1,761,830	+	dld	LU632_RS09320	0.19	+0.9
1,761,850	+	dld	LU632_RS09320	0.20	+0.5
1,761,851	-	dld	LU632_RS09320	0.20	-1.8
1,761,874	+	dld	LU632_RS09320	0.22	-0.5
1,761,874	+	dld	LU632_RS09320	0.22	+0.1
1,761,875	-	dld	LU632_RS09320	0.22	+0.5
1,761,875	-	dld	LU632_RS09320	0.22	-0.8
1,761,975	+	dld	LU632_RS09320	0.29	+0.5
1,761,975	+	dld	LU632_RS09320	0.29	-2.6
1,762,117	+	dld	LU632_RS09320	0.39	-0.3
1,762,142	+	dld	LU632_RS09320	0.41	-1.6
1,762,143	-	dld	LU632_RS09320	0.41	+1.9
1,762,147	+	dld	LU632_RS09320	0.41	-0.0
1,762,148	-	dld	LU632_RS09320	0.41	-0.1
1,762,171	-	dld	LU632_RS09320	0.43	-0.5
1,762,298	+	dld	LU632_RS09320	0.52	-0.9