Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt moaA and moaB are separated by 17 nucleotides moaB and moaC are separated by 3 nucleotides moaC and moaD overlap by 8 nucleotides moaD and moaE are separated by 40 nucleotides
LU632_RS09175: moaA - GTP 3',8-cyclase MoaA, at 1,729,129 to 1,730,118
moaA
LU632_RS09180: moaB - molybdenum cofactor biosynthesis protein B, at 1,730,136 to 1,730,651
moaB
LU632_RS09185: moaC - cyclic pyranopterin monophosphate synthase MoaC, at 1,730,655 to 1,731,140
moaC
LU632_RS09190: moaD - molybdopterin synthase sulfur carrier subunit, at 1,731,133 to 1,731,378
moaD
LU632_RS09195: moaE - molybdopterin synthase catalytic subunit MoaE, at 1,731,419 to 1,731,832
moaE
Position (kb) 1730
1731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1729.143 kb on + strand at 1729.150 kb on - strand at 1729.168 kb on + strand at 1729.169 kb on - strand at 1729.169 kb on - strand at 1729.171 kb on + strand at 1729.600 kb on - strand, within moaA at 1729.632 kb on + strand, within moaA at 1729.632 kb on + strand, within moaA at 1729.632 kb on + strand, within moaA at 1729.632 kb on + strand, within moaA at 1729.632 kb on + strand, within moaA at 1729.632 kb on + strand, within moaA at 1729.653 kb on + strand, within moaA at 1729.654 kb on - strand, within moaA at 1729.698 kb on + strand, within moaA at 1729.985 kb on + strand, within moaA at 1730.123 kb on - strand at 1730.123 kb on - strand at 1730.159 kb on + strand at 1730.172 kb on - strand at 1730.217 kb on - strand, within moaB at 1730.410 kb on + strand, within moaB at 1730.431 kb on + strand, within moaB at 1730.431 kb on + strand, within moaB at 1730.431 kb on + strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.432 kb on - strand, within moaB at 1730.553 kb on - strand, within moaB at 1730.697 kb on - strand at 1730.697 kb on - strand at 1730.890 kb on + strand, within moaC at 1731.033 kb on + strand, within moaC at 1731.033 kb on + strand, within moaC at 1731.034 kb on - strand, within moaC at 1731.038 kb on + strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.039 kb on - strand, within moaC at 1731.093 kb on - strand at 1731.376 kb on + strand at 1731.376 kb on + strand at 1731.376 kb on + strand at 1731.377 kb on - strand at 1731.539 kb on + strand, within moaE
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,729,143 + -1.1 1,729,150 - +1.3 1,729,168 + +2.1 1,729,169 - -1.8 1,729,169 - +0.3 1,729,171 + -0.3 1,729,600 - moaA LU632_RS09175 0.48 -0.0 1,729,632 + moaA LU632_RS09175 0.51 -1.4 1,729,632 + moaA LU632_RS09175 0.51 +2.0 1,729,632 + moaA LU632_RS09175 0.51 +1.1 1,729,632 + moaA LU632_RS09175 0.51 +1.0 1,729,632 + moaA LU632_RS09175 0.51 -0.2 1,729,632 + moaA LU632_RS09175 0.51 +0.2 1,729,653 + moaA LU632_RS09175 0.53 -2.0 1,729,654 - moaA LU632_RS09175 0.53 -2.5 1,729,698 + moaA LU632_RS09175 0.57 -1.1 1,729,985 + moaA LU632_RS09175 0.86 +0.1 1,730,123 - -0.3 1,730,123 - -0.5 1,730,159 + +1.5 1,730,172 - +1.0 1,730,217 - moaB LU632_RS09180 0.16 +0.5 1,730,410 + moaB LU632_RS09180 0.53 +2.1 1,730,431 + moaB LU632_RS09180 0.57 -0.8 1,730,431 + moaB LU632_RS09180 0.57 +0.5 1,730,431 + moaB LU632_RS09180 0.57 -1.8 1,730,432 - moaB LU632_RS09180 0.57 -0.5 1,730,432 - moaB LU632_RS09180 0.57 -0.5 1,730,432 - moaB LU632_RS09180 0.57 -0.8 1,730,432 - moaB LU632_RS09180 0.57 +0.7 1,730,553 - moaB LU632_RS09180 0.81 +0.5 1,730,697 - +0.5 1,730,697 - +0.9 1,730,890 + moaC LU632_RS09185 0.48 -0.1 1,731,033 + moaC LU632_RS09185 0.78 +0.5 1,731,033 + moaC LU632_RS09185 0.78 +1.2 1,731,034 - moaC LU632_RS09185 0.78 -3.6 1,731,038 + moaC LU632_RS09185 0.79 -0.6 1,731,039 - moaC LU632_RS09185 0.79 -0.5 1,731,039 - moaC LU632_RS09185 0.79 -2.6 1,731,039 - moaC LU632_RS09185 0.79 +2.0 1,731,039 - moaC LU632_RS09185 0.79 +0.5 1,731,093 - +0.5 1,731,376 + +0.1 1,731,376 + +0.1 1,731,376 + +1.8 1,731,377 - -3.6 1,731,539 + moaE LU632_RS09195 0.29 -1.4
Or see this region's nucleotide sequence