Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08960

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,689,976	+	hisG	LU632_RS08950	0.37	-3.0
1,689,977	-	hisG	LU632_RS08950	0.37	-1.6
1,690,103	+	hisG	LU632_RS08950	0.51	-0.7
1,690,130	-	hisG	LU632_RS08950	0.54	-3.7
1,690,130	-	hisG	LU632_RS08950	0.54	-1.3
1,690,196	-	hisG	LU632_RS08950	0.62	+1.5
1,690,196	-	hisG	LU632_RS08950	0.62	-1.8
1,690,395	-	hisG	LU632_RS08950	0.84	-0.9
1,690,422	+	hisG	LU632_RS08950	0.87	-0.1
1,690,511	+				-1.7
1,690,512	-				+1.5
1,690,515	+				-1.1
1,690,515	+				-3.3
1,690,516	-				-1.9
1,690,536	+				-1.4
1,690,536	+				+2.0
1,690,545	-				-2.2
1,690,545	-				-0.8
1,690,776	-				-0.7
1,690,780	-				-0.2
1,690,895	-				+0.8
1,690,913	+				-0.6
1,691,154	+		LU632_RS08960	0.27	+1.5
1,691,155	-		LU632_RS08960	0.27	+1.1
1,691,279	+		LU632_RS08960	0.42	-0.9
1,691,523	+		LU632_RS08960	0.72	-0.4
1,691,525	+		LU632_RS08960	0.72	+0.5
1,691,563	+		LU632_RS08960	0.76	-0.5
1,691,572	-		LU632_RS08960	0.77	-0.8
1,691,572	-		LU632_RS08960	0.77	-0.8
1,691,605	+		LU632_RS08960	0.81	-1.8
1,691,700	-				-2.0
1,691,700	-				-0.8
1,691,867	-				-1.5
1,691,934	+		LU632_RS08965	0.16	-1.8
1,691,986	+		LU632_RS08965	0.31	+0.5
1,691,986	+		LU632_RS08965	0.31	-1.3
1,691,987	-		LU632_RS08965	0.31	-0.4
1,691,987	-		LU632_RS08965	0.31	-0.0
1,691,987	-		LU632_RS08965	0.31	+1.3
1,692,034	-		LU632_RS08965	0.44	-3.5
1,692,045	+		LU632_RS08965	0.48	-0.5
1,692,045	+		LU632_RS08965	0.48	+0.5
1,692,046	-		LU632_RS08965	0.48	+1.8
1,692,046	-		LU632_RS08965	0.48	+0.8
1,692,275	+		LU632_RS08970	0.10	-0.8
1,692,275	+		LU632_RS08970	0.10	-1.1
1,692,498	+		LU632_RS08970	0.60	-2.8
1,692,608	+		LU632_RS08970	0.84	-0.7
1,692,608	+		LU632_RS08970	0.84	-0.1
1,692,608	+		LU632_RS08970	0.84	-2.6
1,692,609	-		LU632_RS08970	0.85	+0.8
1,692,643	+				-0.4
1,692,663	-				+0.4
1,692,663	-				-1.4
1,692,683	-				+0.3
1,692,703	+				+0.4
1,692,703	+				-0.2