Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08945

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,687,380	+	hisC	LU632_RS08940	0.13	-2.0
1,687,380	+	hisC	LU632_RS08940	0.13	-1.5
1,687,442	+	hisC	LU632_RS08940	0.18	-3.6
1,687,442	+	hisC	LU632_RS08940	0.18	-2.1
1,687,442	+	hisC	LU632_RS08940	0.18	-2.5
1,687,442	+	hisC	LU632_RS08940	0.18	-0.1
1,687,442	+	hisC	LU632_RS08940	0.18	-2.3
1,687,442	+	hisC	LU632_RS08940	0.18	-1.6
1,687,443	-	hisC	LU632_RS08940	0.18	-1.5
1,687,443	-	hisC	LU632_RS08940	0.18	-0.9
1,687,443	-	hisC	LU632_RS08940	0.18	-2.5
1,687,443	-	hisC	LU632_RS08940	0.18	-0.5
1,687,521	+	hisC	LU632_RS08940	0.25	-2.7
1,687,527	+	hisC	LU632_RS08940	0.26	-1.2
1,687,676	-	hisC	LU632_RS08940	0.40	+0.1
1,687,711	+	hisC	LU632_RS08940	0.43	-0.2
1,687,716	+	hisC	LU632_RS08940	0.43	-2.4
1,687,774	+	hisC	LU632_RS08940	0.49	+0.5
1,687,774	+	hisC	LU632_RS08940	0.49	-1.5
1,687,774	+	hisC	LU632_RS08940	0.49	-1.5
1,687,777	-	hisC	LU632_RS08940	0.49	-1.8
1,687,777	-	hisC	LU632_RS08940	0.49	-1.2
1,687,778	+	hisC	LU632_RS08940	0.49	-2.3
1,687,778	+	hisC	LU632_RS08940	0.49	-0.2
1,687,778	+	hisC	LU632_RS08940	0.49	-0.1
1,687,778	+	hisC	LU632_RS08940	0.49	-1.2
1,687,778	+	hisC	LU632_RS08940	0.49	-1.6
1,687,778	+	hisC	LU632_RS08940	0.49	+2.1
1,687,779	-	hisC	LU632_RS08940	0.49	-1.1
1,687,886	+	hisC	LU632_RS08940	0.59	+0.5
1,687,958	-	hisC	LU632_RS08940	0.65	-1.5
1,687,958	-	hisC	LU632_RS08940	0.65	-2.8
1,688,000	+	hisC	LU632_RS08940	0.69	-2.3
1,688,000	+	hisC	LU632_RS08940	0.69	+0.5
1,688,001	-	hisC	LU632_RS08940	0.69	-1.2
1,688,001	-	hisC	LU632_RS08940	0.69	-1.6
1,688,005	-	hisC	LU632_RS08940	0.70	-1.5
1,688,129	+	hisC	LU632_RS08940	0.81	-2.2
1,688,242	+				-1.6
1,688,242	+				-0.3
1,688,242	+				-2.6
1,688,242	+				-1.7
1,688,242	+				-1.5
1,688,243	-				-0.2
1,688,243	-				-2.2
1,688,243	-				-2.3
1,688,243	-				-0.9
1,688,286	+				-3.1
1,688,286	+				-0.5
1,688,345	+				-2.2
1,688,346	-				+0.8
1,688,355	-				-1.8
1,688,522	-	hisD	LU632_RS08945	0.15	+0.5
1,688,612	+	hisD	LU632_RS08945	0.21	-3.2
1,688,943	-	hisD	LU632_RS08945	0.47	-0.5
1,688,943	-	hisD	LU632_RS08945	0.47	-1.5
1,688,943	-	hisD	LU632_RS08945	0.47	-0.1
1,688,998	+	hisD	LU632_RS08945	0.51	-2.2
1,688,999	-	hisD	LU632_RS08945	0.51	-2.1
1,689,032	+	hisD	LU632_RS08945	0.54	+0.1
1,689,210	+	hisD	LU632_RS08945	0.67	-2.9
1,689,211	-	hisD	LU632_RS08945	0.67	-1.5
1,689,247	+	hisD	LU632_RS08945	0.70	-2.1
1,689,247	+	hisD	LU632_RS08945	0.70	-0.9
1,689,248	-	hisD	LU632_RS08945	0.70	-3.1
1,689,248	-	hisD	LU632_RS08945	0.70	-1.0
1,689,353	+	hisD	LU632_RS08945	0.78	-0.7
1,689,354	-	hisD	LU632_RS08945	0.78	-1.5
1,689,476	-	hisD	LU632_RS08945	0.88	-1.9
1,689,518	+				-0.9
1,689,521	+				-1.6
1,689,643	+				+1.8
1,689,743	+	hisG	LU632_RS08950	0.11	-0.7
1,689,743	+	hisG	LU632_RS08950	0.11	-0.2
1,689,783	+	hisG	LU632_RS08950	0.16	-1.7
1,689,857	+	hisG	LU632_RS08950	0.24	-1.3
1,689,857	+	hisG	LU632_RS08950	0.24	-2.7
1,689,857	+	hisG	LU632_RS08950	0.24	+0.5
1,689,858	-	hisG	LU632_RS08950	0.24	-0.6
1,689,859	+	hisG	LU632_RS08950	0.24	-0.8
1,689,860	-	hisG	LU632_RS08950	0.24	-1.2
1,689,883	-	hisG	LU632_RS08950	0.27	-0.6
1,689,909	-	hisG	LU632_RS08950	0.30	-1.3
1,689,913	-	hisG	LU632_RS08950	0.30	-1.9
1,689,976	+	hisG	LU632_RS08950	0.37	-3.0
1,689,977	-	hisG	LU632_RS08950	0.37	-1.6
1,690,103	+	hisG	LU632_RS08950	0.51	-0.7
1,690,130	-	hisG	LU632_RS08950	0.54	-3.7
1,690,130	-	hisG	LU632_RS08950	0.54	-1.3
1,690,196	-	hisG	LU632_RS08950	0.62	+1.5
1,690,196	-	hisG	LU632_RS08950	0.62	-1.8
1,690,395	-	hisG	LU632_RS08950	0.84	-0.9
1,690,422	+	hisG	LU632_RS08950	0.87	-0.1
1,690,511	+				-1.7
1,690,512	-				+1.5
1,690,515	+				-1.1
1,690,515	+				-3.3
1,690,516	-				-1.9
1,690,536	+				-1.4
1,690,536	+				+2.0
1,690,545	-				-2.2
1,690,545	-				-0.8