Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08815

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,659,425	+	wcaK	LU632_RS08810	0.35	-0.2
1,659,425	+	wcaK	LU632_RS08810	0.35	+1.4
1,659,426	-	wcaK	LU632_RS08810	0.35	+1.5
1,659,426	-	wcaK	LU632_RS08810	0.35	+0.8
1,659,426	-	wcaK	LU632_RS08810	0.35	-0.4
1,659,427	+	wcaK	LU632_RS08810	0.35	+0.5
1,659,427	+	wcaK	LU632_RS08810	0.35	-3.1
1,659,427	+	wcaK	LU632_RS08810	0.35	+1.1
1,659,427	+	wcaK	LU632_RS08810	0.35	-1.9
1,659,427	+	wcaK	LU632_RS08810	0.35	+2.2
1,659,427	+	wcaK	LU632_RS08810	0.35	-1.5
1,659,428	-	wcaK	LU632_RS08810	0.35	+0.6
1,659,428	-	wcaK	LU632_RS08810	0.35	+0.3
1,659,428	-	wcaK	LU632_RS08810	0.35	-0.2
1,659,428	-	wcaK	LU632_RS08810	0.35	-0.5
1,659,428	-	wcaK	LU632_RS08810	0.35	+1.5
1,659,428	-	wcaK	LU632_RS08810	0.35	+0.4
1,659,428	-	wcaK	LU632_RS08810	0.35	-1.1
1,659,429	+	wcaK	LU632_RS08810	0.35	-0.9
1,659,429	+	wcaK	LU632_RS08810	0.35	+3.4
1,659,429	+	wcaK	LU632_RS08810	0.35	+0.8
1,659,430	-	wcaK	LU632_RS08810	0.35	-2.4
1,659,430	-	wcaK	LU632_RS08810	0.35	-1.2
1,659,430	-	wcaK	LU632_RS08810	0.35	-0.7
1,659,681	+	wcaK	LU632_RS08810	0.55	+3.3
1,659,681	+	wcaK	LU632_RS08810	0.55	-2.1
1,659,685	-	wcaK	LU632_RS08810	0.56	-1.8
1,659,810	+	wcaK	LU632_RS08810	0.66	-0.5
1,659,810	+	wcaK	LU632_RS08810	0.66	-1.8
1,659,810	+	wcaK	LU632_RS08810	0.66	+2.1
1,659,811	-	wcaK	LU632_RS08810	0.66	-1.5
1,659,832	+	wcaK	LU632_RS08810	0.67	-1.5
1,659,850	-	wcaK	LU632_RS08810	0.69	-1.5
1,659,878	+	wcaK	LU632_RS08810	0.71	+1.7
1,659,878	+	wcaK	LU632_RS08810	0.71	-0.8
1,659,878	+	wcaK	LU632_RS08810	0.71	+2.1
1,659,879	-	wcaK	LU632_RS08810	0.71	-0.9
1,659,895	+	wcaK	LU632_RS08810	0.72	+0.8
1,659,896	-	wcaK	LU632_RS08810	0.72	-1.8
1,659,939	-	wcaK	LU632_RS08810	0.76	-1.5
1,659,941	+	wcaK	LU632_RS08810	0.76	+0.9
1,659,941	+	wcaK	LU632_RS08810	0.76	-1.3
1,660,031	-	wcaK	LU632_RS08810	0.83	-1.1
1,660,116	+				+0.7
1,660,137	-				-2.5
1,660,213	-				-3.4
1,660,251	+				+0.1
1,660,397	+		LU632_RS08815	0.12	-2.4
1,660,421	+		LU632_RS08815	0.14	-2.3
1,660,748	+		LU632_RS08815	0.41	-2.1
1,660,921	-		LU632_RS08815	0.55	-3.3
1,660,982	+		LU632_RS08815	0.60	+1.5
1,660,982	+		LU632_RS08815	0.60	-0.6
1,661,335	-		LU632_RS08815	0.89	-1.3
1,661,335	-		LU632_RS08815	0.89	-2.5
1,661,581	-				+3.1
1,661,601	+		LU632_RS08820	0.10	-0.2
1,661,602	-		LU632_RS08820	0.10	-1.9
1,661,648	-		LU632_RS08820	0.14	-0.5
1,661,649	+		LU632_RS08820	0.14	-2.7
1,661,650	-		LU632_RS08820	0.14	-2.7
1,661,650	-		LU632_RS08820	0.14	+0.0
1,661,667	+		LU632_RS08820	0.15	+0.2
1,661,667	+		LU632_RS08820	0.15	-3.6
1,661,668	-		LU632_RS08820	0.15	-1.9
1,661,691	+		LU632_RS08820	0.17	-1.0
1,661,739	-		LU632_RS08820	0.21	-0.5
1,661,860	-		LU632_RS08820	0.30	-1.1
1,661,958	+		LU632_RS08820	0.37	-0.4
1,662,033	+		LU632_RS08820	0.42	-1.6
1,662,091	+		LU632_RS08820	0.47	+0.1
1,662,336	+		LU632_RS08820	0.65	-1.5
1,662,337	-		LU632_RS08820	0.65	-0.3
1,662,358	+		LU632_RS08820	0.67	-1.5
1,662,369	-		LU632_RS08820	0.67	-1.5
1,662,375	+		LU632_RS08820	0.68	-1.9
1,662,376	-		LU632_RS08820	0.68	-1.9
1,662,404	-		LU632_RS08820	0.70	-1.1
1,662,436	-		LU632_RS08820	0.72	-2.3
1,662,436	-		LU632_RS08820	0.72	+1.5