Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08800

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,654,411	+				-3.0
1,654,411	+				-2.1
1,654,412	-				-1.9
1,654,413	+				-2.1
1,654,414	-				-0.3
1,654,581	+				-0.5
1,654,581	+				+2.7
1,654,581	+				-0.5
1,654,582	-				+1.1
1,654,582	-				+0.7
1,654,649	+		LU632_RS08795	0.15	-1.1
1,654,649	+		LU632_RS08795	0.15	+0.5
1,654,649	+		LU632_RS08795	0.15	+0.5
1,654,649	+		LU632_RS08795	0.15	+0.5
1,654,649	+		LU632_RS08795	0.15	-0.5
1,654,650	-		LU632_RS08795	0.15	+2.6
1,654,650	-		LU632_RS08795	0.15	-0.7
1,654,650	-		LU632_RS08795	0.15	+0.4
1,654,650	-		LU632_RS08795	0.15	-0.3
1,654,650	-		LU632_RS08795	0.15	+0.6
1,654,650	-		LU632_RS08795	0.15	+1.8
1,654,650	-		LU632_RS08795	0.15	-0.5
1,654,650	-		LU632_RS08795	0.15	+0.5
1,654,650	-		LU632_RS08795	0.15	+1.8
1,654,650	-		LU632_RS08795	0.15	-0.5
1,654,651	+		LU632_RS08795	0.15	+0.2
1,654,651	+		LU632_RS08795	0.15	-0.1
1,654,651	+		LU632_RS08795	0.15	-1.3
1,654,651	+		LU632_RS08795	0.15	+1.3
1,654,651	+		LU632_RS08795	0.15	+2.1
1,654,652	-		LU632_RS08795	0.15	+0.5
1,654,652	-		LU632_RS08795	0.15	+2.2
1,654,654	-		LU632_RS08795	0.15	-1.2
1,654,654	-		LU632_RS08795	0.15	+2.6
1,654,654	-		LU632_RS08795	0.15	+2.2
1,654,781	-		LU632_RS08795	0.32	-1.1
1,654,781	-		LU632_RS08795	0.32	-2.6
1,655,005	+		LU632_RS08795	0.62	-1.3
1,655,363	+				+0.4
1,655,444	-				-2.7
1,655,449	+				-1.1
1,655,896	+		LU632_RS08800	0.47	-1.8
1,656,003	-		LU632_RS08800	0.57	-1.5
1,656,127	-		LU632_RS08800	0.69	-1.6
1,656,137	-		LU632_RS08800	0.70	-1.1
1,656,137	-		LU632_RS08800	0.70	-1.8
1,656,414	+				-0.5
1,656,418	-				-3.1
1,656,466	+				-0.1
1,656,466	+				+3.7
1,656,470	+				-0.1
1,656,495	+				+2.5
1,656,496	-				+1.6
1,656,496	-				+0.2
1,656,496	-				+0.1
1,656,585	+				-0.0
1,656,585	+				+0.6
1,656,588	+				+1.4
1,656,589	-				+2.1
1,656,620	+				-3.6
1,656,621	-				+0.7
1,656,796	-				-0.5
1,656,801	-				-1.8
1,656,840	+				-1.0
1,656,848	+				-1.6
1,656,948	-		LU632_RS08805	0.14	-1.4
1,657,053	-		LU632_RS08805	0.19	-1.3
1,657,153	+		LU632_RS08805	0.24	-1.1
1,657,153	+		LU632_RS08805	0.24	-0.4
1,657,153	+		LU632_RS08805	0.24	-3.9
1,657,154	-		LU632_RS08805	0.24	-0.3
1,657,154	-		LU632_RS08805	0.24	-1.7
1,657,154	-		LU632_RS08805	0.24	+1.5
1,657,157	+		LU632_RS08805	0.24	-1.2
1,657,157	+		LU632_RS08805	0.24	-0.5
1,657,157	+		LU632_RS08805	0.24	-1.1
1,657,157	+		LU632_RS08805	0.24	-3.2
1,657,158	-		LU632_RS08805	0.24	-1.2
1,657,158	-		LU632_RS08805	0.24	+0.2
1,657,160	+		LU632_RS08805	0.24	-1.9
1,657,161	-		LU632_RS08805	0.24	-0.6
1,657,161	-		LU632_RS08805	0.24	-1.5
1,657,161	-		LU632_RS08805	0.24	-0.7
1,657,401	+		LU632_RS08805	0.35	-2.2
1,657,401	+		LU632_RS08805	0.35	-2.8
1,657,401	+		LU632_RS08805	0.35	+1.3
1,657,401	+		LU632_RS08805	0.35	-0.4
1,657,401	+		LU632_RS08805	0.35	-0.6
1,657,402	-		LU632_RS08805	0.35	-2.4
1,657,402	-		LU632_RS08805	0.35	-0.8