Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08780

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,649,234	+		LU632_RS08770	0.64	-1.2
1,649,453	-		LU632_RS08770	0.83	-1.8
1,649,456	+		LU632_RS08770	0.83	-0.5
1,649,603	+				-1.1
1,649,603	+				-0.6
1,649,665	+				-2.3
1,649,695	+				+0.2
1,649,695	+				+0.4
1,649,769	+		LU632_RS08775	0.25	-3.2
1,649,770	-		LU632_RS08775	0.25	-3.5
1,649,771	+		LU632_RS08775	0.26	+0.8
1,649,771	+		LU632_RS08775	0.26	-0.0
1,649,772	-		LU632_RS08775	0.26	-1.5
1,649,851	-		LU632_RS08775	0.44	-2.9
1,649,967	+		LU632_RS08775	0.71	-1.5
1,649,968	+		LU632_RS08775	0.71	-1.1
1,649,983	+		LU632_RS08775	0.74	+0.5
1,650,042	-		LU632_RS08775	0.88	-1.5
1,650,048	+		LU632_RS08775	0.89	-2.1
1,650,049	-		LU632_RS08775	0.89	+1.5
1,650,085	-				-1.6
1,650,112	+				-1.5
1,650,113	-				-1.6
1,650,113	-				-2.7
1,650,121	+				-0.5
1,650,225	+				+1.9
1,650,226	-				-2.4
1,650,226	-				+0.5
1,650,229	+				-3.0
1,650,229	+				-0.9
1,650,230	-				-0.8
1,650,230	-				-3.2
1,650,248	+				-2.5
1,650,249	-				+0.5
1,650,249	-				-1.8
1,650,249	-				-2.0
1,650,516	+	wzc	LU632_RS08780	0.19	-1.8
1,650,517	-	wzc	LU632_RS08780	0.19	-2.2
1,650,517	-	wzc	LU632_RS08780	0.19	+0.1
1,650,622	+	wzc	LU632_RS08780	0.24	-1.1
1,650,739	+	wzc	LU632_RS08780	0.29	-1.9
1,650,776	-	wzc	LU632_RS08780	0.31	-0.9
1,650,809	+	wzc	LU632_RS08780	0.32	-0.1
1,650,866	+	wzc	LU632_RS08780	0.35	-3.6
1,650,866	+	wzc	LU632_RS08780	0.35	-0.2
1,650,867	-	wzc	LU632_RS08780	0.35	-2.5
1,650,867	-	wzc	LU632_RS08780	0.35	-0.3
1,650,867	-	wzc	LU632_RS08780	0.35	-1.1
1,650,974	-	wzc	LU632_RS08780	0.40	-3.2
1,650,982	+	wzc	LU632_RS08780	0.40	-1.1
1,651,012	+	wzc	LU632_RS08780	0.41	-0.8
1,651,013	-	wzc	LU632_RS08780	0.41	-1.1
1,651,013	-	wzc	LU632_RS08780	0.41	-1.5
1,651,013	-	wzc	LU632_RS08780	0.41	-0.5
1,651,013	-	wzc	LU632_RS08780	0.41	-3.1
1,651,052	-	wzc	LU632_RS08780	0.43	-3.1
1,651,056	+	wzc	LU632_RS08780	0.43	-1.8
1,651,057	-	wzc	LU632_RS08780	0.43	-0.4
1,651,127	-	wzc	LU632_RS08780	0.47	+0.7
1,651,156	+	wzc	LU632_RS08780	0.48	-1.8
1,651,246	-	wzc	LU632_RS08780	0.52	-1.5
1,651,265	+	wzc	LU632_RS08780	0.53	-0.1
1,651,265	+	wzc	LU632_RS08780	0.53	-0.6
1,651,265	+	wzc	LU632_RS08780	0.53	-1.8
1,651,265	+	wzc	LU632_RS08780	0.53	+0.5
1,651,266	-	wzc	LU632_RS08780	0.53	-2.9
1,651,267	+	wzc	LU632_RS08780	0.53	-0.5
1,651,509	-	wzc	LU632_RS08780	0.64	-1.8
1,651,540	+	wzc	LU632_RS08780	0.66	+0.5
1,651,691	-	wzc	LU632_RS08780	0.73	+2.1
1,651,700	-	wzc	LU632_RS08780	0.73	+0.5
1,651,711	+	wzc	LU632_RS08780	0.73	+0.2
1,651,745	-	wzc	LU632_RS08780	0.75	-2.1
1,651,798	-	wzc	LU632_RS08780	0.77	-1.5
1,651,840	-	wzc	LU632_RS08780	0.79	-0.9
1,651,850	-	wzc	LU632_RS08780	0.80	-0.9
1,651,850	-	wzc	LU632_RS08780	0.80	-0.5
1,651,894	-	wzc	LU632_RS08780	0.82	-2.6
1,651,894	-	wzc	LU632_RS08780	0.82	-1.3
1,651,894	-	wzc	LU632_RS08780	0.82	-1.7
1,651,903	+	wzc	LU632_RS08780	0.82	-1.8
1,652,001	+	wzc	LU632_RS08780	0.87	-3.4
1,652,002	-	wzc	LU632_RS08780	0.87	-2.3
1,652,002	-	wzc	LU632_RS08780	0.87	-2.5
1,652,018	-	wzc	LU632_RS08780	0.88	-1.9
1,652,024	+	wzc	LU632_RS08780	0.88	-2.1
1,652,034	+	wzc	LU632_RS08780	0.88	-2.9
1,652,240	+				-1.8
1,652,241	-				-1.3
1,652,262	-				-1.0
1,652,288	+				+1.1
1,652,403	+				-1.7
1,652,431	+				-0.9
1,652,432	-				-1.8
1,652,518	-		LU632_RS08785	0.14	-1.5
1,652,632	-		LU632_RS08785	0.26	-1.2
1,652,660	-		LU632_RS08785	0.29	-3.1
1,652,728	-		LU632_RS08785	0.37	-2.8
1,652,768	-		LU632_RS08785	0.41	-3.1
1,652,782	-		LU632_RS08785	0.43	-2.7
1,652,784	+		LU632_RS08785	0.43	-2.3
1,652,855	-		LU632_RS08785	0.51	+0.5
1,652,897	+		LU632_RS08785	0.55	-1.6
1,653,028	+		LU632_RS08785	0.70	-3.5
1,653,028	+		LU632_RS08785	0.70	-1.8
1,653,037	-		LU632_RS08785	0.71	-0.7
1,653,103	-		LU632_RS08785	0.78	-1.6
1,653,136	-		LU632_RS08785	0.82	-0.7
1,653,140	-		LU632_RS08785	0.82	-3.3
1,653,140	-		LU632_RS08785	0.82	-2.6
1,653,209	+		LU632_RS08785	0.90	-4.0