Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08720

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,639,099	+				-3.9
1,639,100	-				+1.4
1,639,150	+				-1.8
1,639,151	-				+0.3
1,639,152	+				-1.3
1,639,153	-				-0.6
1,639,189	+				+1.0
1,639,189	+				+0.2
1,639,189	+				+1.2
1,639,190	-				-0.1
1,639,190	-				+0.8
1,639,190	-				+0.9
1,639,216	+				-0.5
1,639,217	-				+0.9
1,639,269	+				-1.5
1,639,270	-				+0.5
1,639,287	-				+0.7
1,639,394	-				+1.4
1,639,602	-				-2.1
1,639,621	+		LU632_RS08725	0.36	-1.0
1,639,622	-		LU632_RS08725	0.37	+0.5
1,639,702	+		LU632_RS08725	0.78	+2.0
1,639,702	+		LU632_RS08725	0.78	-1.1
1,639,702	+		LU632_RS08725	0.78	-0.5
1,639,702	+		LU632_RS08725	0.78	-1.5
1,639,703	-		LU632_RS08725	0.78	+3.3
1,639,703	-		LU632_RS08725	0.78	-2.4
1,639,747	+				+1.2
1,639,780	+				+2.3
1,639,818	-				+2.2
1,639,967	+		LU632_RS08730	0.54	+1.4
1,639,987	-		LU632_RS08730	0.60	+1.7
1,639,991	+		LU632_RS08730	0.62	-1.3
1,639,991	+		LU632_RS08730	0.62	+0.1
1,639,991	+		LU632_RS08730	0.62	+2.2
1,639,991	+		LU632_RS08730	0.62	+2.3
1,639,991	+		LU632_RS08730	0.62	-2.4
1,639,992	-		LU632_RS08730	0.62	-1.0
1,639,992	-		LU632_RS08730	0.62	-1.1
1,639,995	-		LU632_RS08730	0.63	-0.5
1,639,995	-		LU632_RS08730	0.63	+2.0
1,640,071	+		LU632_RS08730	0.88	-0.9
1,640,109	-				+0.9
1,640,119	-				-0.5
1,640,149	+				+0.9
1,640,149	+				+1.5
1,640,149	+				-1.0
1,640,150	-				-1.6
1,640,334	-				-1.1
1,640,335	-				-2.8
1,640,357	+				+1.3
1,640,486	-				-0.5
1,640,520	+				+0.2
1,640,527	+				-1.6
1,640,527	+				+0.8
1,640,528	-				-1.8
1,640,528	-				-0.5
1,640,528	-				+0.4
1,640,530	+				+0.0