Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08265 and purN are separated by 59 nucleotides purN and purM overlap by 4 nucleotides purM and upp are separated by 242 nucleotides upp and LU632_RS08285 overlap by 1 nucleotides
LU632_RS08265: LU632_RS08265 - hypothetical protein, at 1,555,350 to 1,555,499
_RS08265
LU632_RS08270: purN - phosphoribosylglycinamide formyltransferase, at 1,555,559 to 1,556,197
purN
LU632_RS08275: purM - phosphoribosylformylglycinamidine cyclo-ligase, at 1,556,194 to 1,557,234
purM
LU632_RS08280: upp - uracil phosphoribosyltransferase, at 1,557,477 to 1,558,103
upp
LU632_RS08285: LU632_RS08285 - hypothetical protein, at 1,558,103 to 1,558,258
_RS08285
Position (kb) 1556
1557
1558 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 1555.258 kb on + strand at 1555.259 kb on - strand at 1555.259 kb on - strand at 1555.264 kb on - strand at 1555.415 kb on + strand, within LU632_RS08265 at 1555.415 kb on + strand, within LU632_RS08265 at 1555.417 kb on + strand, within LU632_RS08265 at 1555.417 kb on + strand, within LU632_RS08265 at 1555.418 kb on - strand, within LU632_RS08265 at 1555.418 kb on - strand, within LU632_RS08265 at 1555.418 kb on - strand, within LU632_RS08265 at 1555.431 kb on - strand, within LU632_RS08265 at 1555.543 kb on + strand at 1555.544 kb on - strand at 1555.652 kb on + strand, within purN at 1555.665 kb on + strand, within purN at 1555.714 kb on + strand, within purN at 1555.715 kb on - strand, within purN at 1555.930 kb on + strand, within purN at 1555.930 kb on + strand, within purN at 1555.931 kb on - strand, within purN at 1555.931 kb on - strand, within purN at 1555.933 kb on - strand, within purN at 1555.933 kb on - strand, within purN at 1555.962 kb on + strand, within purN at 1555.962 kb on + strand, within purN at 1555.963 kb on - strand, within purN at 1555.983 kb on - strand, within purN at 1556.278 kb on + strand at 1556.279 kb on - strand at 1556.432 kb on - strand, within purM at 1556.502 kb on + strand, within purM at 1556.550 kb on - strand, within purM at 1556.553 kb on + strand, within purM at 1556.589 kb on + strand, within purM at 1556.774 kb on + strand, within purM at 1556.774 kb on + strand, within purM at 1556.789 kb on + strand, within purM at 1556.790 kb on - strand, within purM at 1556.909 kb on + strand, within purM at 1556.909 kb on + strand, within purM at 1556.909 kb on + strand, within purM at 1556.909 kb on + strand, within purM at 1556.910 kb on - strand, within purM at 1556.910 kb on - strand, within purM at 1556.912 kb on + strand, within purM at 1556.912 kb on + strand, within purM at 1556.913 kb on - strand, within purM at 1557.157 kb on - strand at 1557.209 kb on + strand at 1557.209 kb on + strand at 1557.280 kb on - strand at 1557.295 kb on + strand at 1557.402 kb on - strand at 1557.406 kb on - strand at 1557.406 kb on - strand at 1557.406 kb on - strand at 1557.433 kb on + strand at 1557.434 kb on + strand at 1557.495 kb on - strand at 1557.515 kb on + strand at 1557.516 kb on - strand at 1557.761 kb on + strand, within upp at 1557.761 kb on + strand, within upp at 1557.762 kb on - strand, within upp at 1557.899 kb on + strand, within upp at 1558.012 kb on - strand, within upp at 1558.101 kb on + strand at 1558.107 kb on + strand at 1558.107 kb on + strand at 1558.108 kb on - strand at 1558.191 kb on - strand, within LU632_RS08285 at 1558.191 kb on - strand, within LU632_RS08285
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,555,258 + -1.0 1,555,259 - +0.6 1,555,259 - -1.4 1,555,264 - -0.3 1,555,415 + LU632_RS08265 0.43 -1.8 1,555,415 + LU632_RS08265 0.43 -0.7 1,555,417 + LU632_RS08265 0.45 +0.2 1,555,417 + LU632_RS08265 0.45 +2.6 1,555,418 - LU632_RS08265 0.45 -1.8 1,555,418 - LU632_RS08265 0.45 +2.1 1,555,418 - LU632_RS08265 0.45 +2.7 1,555,431 - LU632_RS08265 0.54 +3.9 1,555,543 + -0.4 1,555,544 - -0.3 1,555,652 + purN LU632_RS08270 0.15 +1.4 1,555,665 + purN LU632_RS08270 0.17 +5.1 1,555,714 + purN LU632_RS08270 0.24 +5.8 1,555,715 - purN LU632_RS08270 0.24 -0.4 1,555,930 + purN LU632_RS08270 0.58 +1.6 1,555,930 + purN LU632_RS08270 0.58 -1.0 1,555,931 - purN LU632_RS08270 0.58 +0.2 1,555,931 - purN LU632_RS08270 0.58 +0.0 1,555,933 - purN LU632_RS08270 0.59 +0.1 1,555,933 - purN LU632_RS08270 0.59 -1.4 1,555,962 + purN LU632_RS08270 0.63 +0.3 1,555,962 + purN LU632_RS08270 0.63 -1.4 1,555,963 - purN LU632_RS08270 0.63 +1.1 1,555,983 - purN LU632_RS08270 0.66 -4.4 1,556,278 + -1.6 1,556,279 - +0.1 1,556,432 - purM LU632_RS08275 0.23 -3.3 1,556,502 + purM LU632_RS08275 0.30 -1.4 1,556,550 - purM LU632_RS08275 0.34 -2.5 1,556,553 + purM LU632_RS08275 0.34 -2.4 1,556,589 + purM LU632_RS08275 0.38 +0.6 1,556,774 + purM LU632_RS08275 0.56 -0.5 1,556,774 + purM LU632_RS08275 0.56 -0.8 1,556,789 + purM LU632_RS08275 0.57 -0.5 1,556,790 - purM LU632_RS08275 0.57 -1.2 1,556,909 + purM LU632_RS08275 0.69 -2.1 1,556,909 + purM LU632_RS08275 0.69 -0.3 1,556,909 + purM LU632_RS08275 0.69 -3.2 1,556,909 + purM LU632_RS08275 0.69 +0.6 1,556,910 - purM LU632_RS08275 0.69 -3.8 1,556,910 - purM LU632_RS08275 0.69 +0.1 1,556,912 + purM LU632_RS08275 0.69 -0.4 1,556,912 + purM LU632_RS08275 0.69 -1.5 1,556,913 - purM LU632_RS08275 0.69 +0.6 1,557,157 - -0.2 1,557,209 + +0.6 1,557,209 + +0.6 1,557,280 - +0.2 1,557,295 + -2.0 1,557,402 - -0.5 1,557,406 - -1.4 1,557,406 - -1.4 1,557,406 - +0.9 1,557,433 + -1.5 1,557,434 + +0.3 1,557,495 - +1.4 1,557,515 + +0.6 1,557,516 - +0.8 1,557,761 + upp LU632_RS08280 0.45 +2.1 1,557,761 + upp LU632_RS08280 0.45 -0.4 1,557,762 - upp LU632_RS08280 0.45 -3.7 1,557,899 + upp LU632_RS08280 0.67 +1.2 1,558,012 - upp LU632_RS08280 0.85 +0.2 1,558,101 + -0.0 1,558,107 + +0.5 1,558,107 + -1.0 1,558,108 - +2.2 1,558,191 - LU632_RS08285 0.56 -0.9 1,558,191 - LU632_RS08285 0.56 -0.4
Or see this region's nucleotide sequence