Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08075 and LU632_RS08080 are separated by 29 nucleotides LU632_RS08080 and LU632_RS08085 are separated by 34 nucleotides LU632_RS08085 and tnpA are separated by 102 nucleotides tnpA and LU632_RS08095 are separated by 120 nucleotides LU632_RS08095 and elaB are separated by 190 nucleotides
LU632_RS08075: LU632_RS08075 - BNR repeat-containing protein, at 1,513,540 to 1,514,445
_RS08075
LU632_RS08080: LU632_RS08080 - LysR family transcriptional regulator, at 1,514,475 to 1,514,603
_RS08080
LU632_RS08085: LU632_RS08085 - glyoxalase, at 1,514,638 to 1,514,811
_RS08085
LU632_RS08090: tnpA - IS200/IS605 family transposase, at 1,514,914 to 1,515,339
tnpA
LU632_RS08095: LU632_RS08095 - glyoxalase, at 1,515,460 to 1,515,696
_RS08095
LU632_RS08100: elaB - stress response protein ElaB, at 1,515,887 to 1,516,198
elaB
Position (kb) 1514
1515
1516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1513.963 kb on + strand, within LU632_RS08075 at 1513.963 kb on + strand, within LU632_RS08075 at 1514.160 kb on + strand, within LU632_RS08075 at 1514.160 kb on + strand, within LU632_RS08075 at 1514.161 kb on - strand, within LU632_RS08075 at 1514.161 kb on - strand, within LU632_RS08075 at 1514.161 kb on - strand, within LU632_RS08075 at 1514.169 kb on + strand, within LU632_RS08075 at 1514.224 kb on + strand, within LU632_RS08075 at 1514.259 kb on + strand, within LU632_RS08075 at 1514.407 kb on + strand at 1514.407 kb on + strand at 1514.435 kb on + strand at 1514.435 kb on + strand at 1514.437 kb on + strand at 1514.437 kb on + strand at 1514.496 kb on + strand, within LU632_RS08080 at 1514.496 kb on + strand, within LU632_RS08080 at 1514.496 kb on + strand, within LU632_RS08080 at 1514.499 kb on - strand, within LU632_RS08080 at 1514.499 kb on - strand, within LU632_RS08080 at 1514.711 kb on + strand, within LU632_RS08085 at 1514.712 kb on - strand, within LU632_RS08085 at 1514.712 kb on - strand, within LU632_RS08085 at 1515.482 kb on + strand at 1515.483 kb on - strand at 1515.483 kb on - strand at 1515.550 kb on + strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.581 kb on - strand, within LU632_RS08095 at 1515.727 kb on - strand at 1515.728 kb on + strand at 1515.780 kb on + strand at 1515.803 kb on + strand at 1516.073 kb on + strand, within elaB at 1516.074 kb on - strand, within elaB at 1516.074 kb on - strand, within elaB at 1516.077 kb on - strand, within elaB at 1516.077 kb on - strand, within elaB at 1516.080 kb on - strand, within elaB at 1516.099 kb on + strand, within elaB at 1516.100 kb on - strand, within elaB at 1516.233 kb on + strand at 1516.243 kb on + strand at 1516.256 kb on + strand at 1516.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,513,963 + LU632_RS08075 0.47 -3.5 1,513,963 + LU632_RS08075 0.47 +1.1 1,514,160 + LU632_RS08075 0.68 -1.3 1,514,160 + LU632_RS08075 0.68 -0.8 1,514,161 - LU632_RS08075 0.69 +0.5 1,514,161 - LU632_RS08075 0.69 +2.8 1,514,161 - LU632_RS08075 0.69 +0.4 1,514,169 + LU632_RS08075 0.69 -2.9 1,514,224 + LU632_RS08075 0.75 +0.4 1,514,259 + LU632_RS08075 0.79 +0.5 1,514,407 + -0.1 1,514,407 + +0.2 1,514,435 + -1.1 1,514,435 + -0.2 1,514,437 + -0.5 1,514,437 + -3.7 1,514,496 + LU632_RS08080 0.16 -1.6 1,514,496 + LU632_RS08080 0.16 +0.0 1,514,496 + LU632_RS08080 0.16 -0.5 1,514,499 - LU632_RS08080 0.19 +1.5 1,514,499 - LU632_RS08080 0.19 -2.1 1,514,711 + LU632_RS08085 0.42 +0.9 1,514,712 - LU632_RS08085 0.43 -0.5 1,514,712 - LU632_RS08085 0.43 +0.1 1,515,482 + +0.1 1,515,483 - +2.5 1,515,483 - +0.5 1,515,550 + LU632_RS08095 0.38 +2.4 1,515,581 - LU632_RS08095 0.51 -0.0 1,515,581 - LU632_RS08095 0.51 +0.8 1,515,581 - LU632_RS08095 0.51 -1.1 1,515,581 - LU632_RS08095 0.51 -0.1 1,515,581 - LU632_RS08095 0.51 -2.1 1,515,727 - +0.6 1,515,728 + -0.1 1,515,780 + +0.2 1,515,803 + -1.8 1,516,073 + elaB LU632_RS08100 0.60 +0.4 1,516,074 - elaB LU632_RS08100 0.60 +0.3 1,516,074 - elaB LU632_RS08100 0.60 -0.8 1,516,077 - elaB LU632_RS08100 0.61 +0.1 1,516,077 - elaB LU632_RS08100 0.61 -1.5 1,516,080 - elaB LU632_RS08100 0.62 +1.2 1,516,099 + elaB LU632_RS08100 0.68 +1.5 1,516,100 - elaB LU632_RS08100 0.68 +0.1 1,516,233 + +0.0 1,516,243 + -0.5 1,516,256 + +0.1 1,516,257 - +1.7
Or see this region's nucleotide sequence