Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08025

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,503,986	+	nuoM	LU632_RS08020	0.35	-0.9
1,503,986	+	nuoM	LU632_RS08020	0.35	-2.1
1,503,987	-	nuoM	LU632_RS08020	0.35	-0.2
1,503,987	-	nuoM	LU632_RS08020	0.35	+0.5
1,503,987	-	nuoM	LU632_RS08020	0.35	-0.6
1,504,035	+	nuoM	LU632_RS08020	0.38	-1.8
1,504,077	-	nuoM	LU632_RS08020	0.41	-0.2
1,504,119	-	nuoM	LU632_RS08020	0.43	-1.8
1,504,119	-	nuoM	LU632_RS08020	0.43	-2.9
1,504,327	+	nuoM	LU632_RS08020	0.57	-0.8
1,504,328	-	nuoM	LU632_RS08020	0.57	+3.3
1,504,356	-	nuoM	LU632_RS08020	0.59	-0.8
1,504,382	+	nuoM	LU632_RS08020	0.61	+0.3
1,504,407	-	nuoM	LU632_RS08020	0.62	-0.5
1,504,448	+	nuoM	LU632_RS08020	0.65	-1.1
1,504,448	+	nuoM	LU632_RS08020	0.65	-2.8
1,504,449	-	nuoM	LU632_RS08020	0.65	-0.5
1,504,544	+	nuoM	LU632_RS08020	0.71	+0.5
1,504,717	+	nuoM	LU632_RS08020	0.83	-0.3
1,504,717	+	nuoM	LU632_RS08020	0.83	-2.1
1,504,718	-	nuoM	LU632_RS08020	0.83	-2.5
1,504,718	-	nuoM	LU632_RS08020	0.83	-0.8
1,504,720	+	nuoM	LU632_RS08020	0.83	-2.6
1,504,720	+	nuoM	LU632_RS08020	0.83	-0.5
1,504,721	-	nuoM	LU632_RS08020	0.83	-1.4
1,504,721	-	nuoM	LU632_RS08020	0.83	-0.5
1,504,852	+				-2.1
1,504,853	-				-2.8
1,504,933	+				+1.1
1,504,947	-				-1.2
1,504,947	-				-0.3
1,505,098	+				+0.5
1,505,099	-				-0.3
1,505,099	-				-0.3
1,505,199	-	nuoN	LU632_RS08025	0.15	-2.1
1,505,211	-	nuoN	LU632_RS08025	0.16	+0.3
1,505,371	+	nuoN	LU632_RS08025	0.26	-1.1
1,505,459	+	nuoN	LU632_RS08025	0.33	-0.5
1,505,459	+	nuoN	LU632_RS08025	0.33	-1.1
1,505,459	+	nuoN	LU632_RS08025	0.33	-0.7
1,505,461	+	nuoN	LU632_RS08025	0.33	-2.2
1,505,461	+	nuoN	LU632_RS08025	0.33	-0.1
1,505,461	+	nuoN	LU632_RS08025	0.33	-0.5
1,505,462	-	nuoN	LU632_RS08025	0.33	-0.7
1,505,462	-	nuoN	LU632_RS08025	0.33	-1.2
1,505,505	+	nuoN	LU632_RS08025	0.36	-0.5
1,505,569	+	nuoN	LU632_RS08025	0.40	-0.5
1,505,570	-	nuoN	LU632_RS08025	0.40	-1.5
1,505,763	-	nuoN	LU632_RS08025	0.53	-1.8
1,505,875	-	nuoN	LU632_RS08025	0.61	-0.5
1,505,883	-	nuoN	LU632_RS08025	0.62	+0.3
1,505,890	+	nuoN	LU632_RS08025	0.62	-1.5
1,505,969	+	nuoN	LU632_RS08025	0.67	-1.4
1,505,970	-	nuoN	LU632_RS08025	0.68	+0.1
1,505,970	-	nuoN	LU632_RS08025	0.68	-0.1
1,506,063	-	nuoN	LU632_RS08025	0.74	-0.9
1,506,063	-	nuoN	LU632_RS08025	0.74	-0.5
1,506,252	-	nuoN	LU632_RS08025	0.87	-1.1
1,506,252	-	nuoN	LU632_RS08025	0.87	-0.3
1,506,392	+				+1.0
1,506,440	+				+1.2
1,506,441	-				-1.5
1,506,441	-				+1.5
1,506,503	+				+0.2
1,506,503	+				-1.1
1,506,568	-				+0.8
1,506,650	+				+0.2
1,506,650	+				-2.7
1,506,651	-				-0.9
1,507,049	-				+0.5
1,507,049	-				+0.7
1,507,229	+				-0.7
1,507,362	-		LU632_RS08035	0.12	+0.2