Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08000

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,499,066	+				-0.5
1,499,346	+	nuoH	LU632_RS07995	0.34	+0.5
1,499,346	+	nuoH	LU632_RS07995	0.34	-1.1
1,499,392	+	nuoH	LU632_RS07995	0.39	-2.1
1,499,431	+	nuoH	LU632_RS07995	0.43	-0.0
1,499,432	-	nuoH	LU632_RS07995	0.43	-0.5
1,499,442	-	nuoH	LU632_RS07995	0.44	-1.5
1,499,734	+	nuoH	LU632_RS07995	0.74	-0.4
1,499,735	-	nuoH	LU632_RS07995	0.74	-1.3
1,499,735	-	nuoH	LU632_RS07995	0.74	-3.4
1,499,996	+				+0.0
1,499,997	-				-2.8
1,500,010	-				-0.5
1,500,054	+				+1.8
1,500,054	+				-0.6
1,500,224	-	nuoI	LU632_RS08000	0.41	-1.4
1,500,349	+	nuoI	LU632_RS08000	0.64	-1.3
1,500,395	+	nuoI	LU632_RS08000	0.72	-1.3
1,500,395	-	nuoI	LU632_RS08000	0.72	-0.5
1,500,396	-	nuoI	LU632_RS08000	0.73	-1.9
1,500,396	-	nuoI	LU632_RS08000	0.73	+0.5
1,500,396	-	nuoI	LU632_RS08000	0.73	-2.3
1,500,445	+	nuoI	LU632_RS08000	0.82	-1.8
1,500,446	-	nuoI	LU632_RS08000	0.82	-1.5
1,500,446	-	nuoI	LU632_RS08000	0.82	-2.2
1,500,537	+				+1.7
1,500,537	+				-0.8
1,500,643	+	nuoJ	LU632_RS08005	0.16	-2.1
1,500,643	+	nuoJ	LU632_RS08005	0.16	-0.5
1,500,643	+	nuoJ	LU632_RS08005	0.16	+0.2
1,500,643	+	nuoJ	LU632_RS08005	0.16	-1.8
1,500,643	+	nuoJ	LU632_RS08005	0.16	-1.5
1,500,643	+	nuoJ	LU632_RS08005	0.16	-0.5
1,500,644	-	nuoJ	LU632_RS08005	0.16	-0.9
1,500,644	-	nuoJ	LU632_RS08005	0.16	+2.9
1,500,644	-	nuoJ	LU632_RS08005	0.16	-0.1
1,500,645	+	nuoJ	LU632_RS08005	0.16	-0.6
1,500,645	+	nuoJ	LU632_RS08005	0.16	-2.1
1,500,645	+	nuoJ	LU632_RS08005	0.16	-0.5
1,500,646	-	nuoJ	LU632_RS08005	0.17	-1.5
1,500,879	+	nuoJ	LU632_RS08005	0.59	-0.7
1,500,880	-	nuoJ	LU632_RS08005	0.59	-2.8
1,500,964	-	nuoJ	LU632_RS08005	0.74	-0.9
1,501,020	+	nuoJ	LU632_RS08005	0.85	-0.5
1,501,021	-	nuoJ	LU632_RS08005	0.85	-2.3
1,501,190	-	nuoK	LU632_RS08010	0.30	-0.5
1,501,283	+	nuoK	LU632_RS08010	0.60	+2.5
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.1
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.5
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.8
1,501,283	+	nuoK	LU632_RS08010	0.60	-2.1
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.5
1,501,283	+	nuoK	LU632_RS08010	0.60	+0.3
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.8
1,501,284	-	nuoK	LU632_RS08010	0.61	-1.8
1,501,284	-	nuoK	LU632_RS08010	0.61	+0.5
1,501,284	-	nuoK	LU632_RS08010	0.61	-1.4
1,501,533	+				-1.1
1,501,533	+				+0.5
1,501,533	+				-0.1
1,501,534	-				-2.1
1,501,537	+				+2.9
1,501,537	+				-2.8
1,501,538	-				-2.1