Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07965 and LU632_RS07970 are separated by 15 nucleotides LU632_RS07970 and nuoC are separated by 106 nucleotides nuoC and nuoE are separated by 2 nucleotides nuoE and nuoF overlap by 4 nucleotides
LU632_RS07965: LU632_RS07965 - NADH-quinone oxidoreductase subunit A, at 1,491,279 to 1,491,716
_RS07965
LU632_RS07970: LU632_RS07970 - NADH-quinone oxidoreductase subunit B, at 1,491,732 to 1,492,406
_RS07970
LU632_RS07975: nuoC - NADH-quinone oxidoreductase subunit C/D, at 1,492,513 to 1,494,312
nuoC
LU632_RS07980: nuoE - NADH-quinone oxidoreductase subunit NuoE, at 1,494,315 to 1,494,830
nuoE
LU632_RS07985: nuoF - NADH-quinone oxidoreductase subunit NuoF, at 1,494,827 to 1,496,173
nuoF
Position (kb) 1492
1493
1494
1495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1491.523 kb on - strand, within LU632_RS07965 at 1491.528 kb on + strand, within LU632_RS07965 at 1491.528 kb on + strand, within LU632_RS07965 at 1491.529 kb on - strand, within LU632_RS07965 at 1491.714 kb on + strand at 1491.727 kb on + strand at 1491.728 kb on - strand at 1491.843 kb on + strand, within LU632_RS07970 at 1491.843 kb on + strand, within LU632_RS07970 at 1491.844 kb on - strand, within LU632_RS07970 at 1491.844 kb on - strand, within LU632_RS07970 at 1491.844 kb on - strand, within LU632_RS07970 at 1491.894 kb on - strand, within LU632_RS07970 at 1491.936 kb on + strand, within LU632_RS07970 at 1491.936 kb on + strand, within LU632_RS07970 at 1491.936 kb on + strand, within LU632_RS07970 at 1491.936 kb on + strand, within LU632_RS07970 at 1491.937 kb on - strand, within LU632_RS07970 at 1491.937 kb on - strand, within LU632_RS07970 at 1491.966 kb on + strand, within LU632_RS07970 at 1491.967 kb on + strand, within LU632_RS07970 at 1491.968 kb on - strand, within LU632_RS07970 at 1491.968 kb on - strand, within LU632_RS07970 at 1491.968 kb on - strand, within LU632_RS07970 at 1491.968 kb on - strand, within LU632_RS07970 at 1492.029 kb on - strand, within LU632_RS07970 at 1492.149 kb on + strand, within LU632_RS07970 at 1492.150 kb on - strand, within LU632_RS07970 at 1492.158 kb on + strand, within LU632_RS07970 at 1492.203 kb on + strand, within LU632_RS07970 at 1492.204 kb on - strand, within LU632_RS07970 at 1492.206 kb on - strand, within LU632_RS07970 at 1492.236 kb on + strand, within LU632_RS07970 at 1492.237 kb on - strand, within LU632_RS07970 at 1492.237 kb on - strand, within LU632_RS07970 at 1492.237 kb on - strand, within LU632_RS07970 at 1492.238 kb on + strand, within LU632_RS07970 at 1492.239 kb on - strand, within LU632_RS07970 at 1492.415 kb on + strand at 1492.513 kb on - strand at 1492.524 kb on - strand at 1492.600 kb on - strand at 1492.720 kb on + strand, within nuoC at 1492.720 kb on + strand, within nuoC at 1492.720 kb on + strand, within nuoC at 1492.896 kb on + strand, within nuoC at 1492.896 kb on + strand, within nuoC at 1492.896 kb on + strand, within nuoC at 1492.897 kb on - strand, within nuoC at 1492.951 kb on - strand, within nuoC at 1492.983 kb on + strand, within nuoC at 1493.154 kb on + strand, within nuoC at 1493.154 kb on + strand, within nuoC at 1493.154 kb on + strand, within nuoC at 1493.155 kb on - strand, within nuoC at 1493.311 kb on + strand, within nuoC at 1493.311 kb on + strand, within nuoC at 1493.311 kb on + strand, within nuoC at 1493.311 kb on + strand, within nuoC at 1493.311 kb on + strand, within nuoC at 1493.311 kb on + strand, within nuoC at 1493.311 kb on + strand, within nuoC at 1493.312 kb on - strand, within nuoC at 1493.312 kb on - strand, within nuoC at 1493.312 kb on - strand, within nuoC at 1493.312 kb on - strand, within nuoC at 1493.312 kb on - strand, within nuoC at 1493.312 kb on - strand, within nuoC at 1493.313 kb on + strand, within nuoC at 1493.313 kb on + strand, within nuoC at 1493.314 kb on - strand, within nuoC at 1493.454 kb on + strand, within nuoC at 1493.473 kb on + strand, within nuoC at 1493.473 kb on + strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.476 kb on - strand, within nuoC at 1493.476 kb on - strand, within nuoC at 1493.476 kb on - strand, within nuoC at 1493.481 kb on + strand, within nuoC at 1493.482 kb on - strand, within nuoC at 1493.565 kb on + strand, within nuoC at 1493.690 kb on - strand, within nuoC at 1493.826 kb on + strand, within nuoC at 1494.009 kb on + strand, within nuoC at 1494.145 kb on + strand at 1494.146 kb on - strand at 1494.146 kb on - strand at 1494.148 kb on + strand at 1494.196 kb on - strand at 1494.269 kb on - strand at 1494.314 kb on + strand at 1494.315 kb on - strand at 1494.708 kb on - strand, within nuoE at 1494.773 kb on + strand, within nuoE at 1494.850 kb on + strand at 1495.127 kb on + strand, within nuoF at 1495.128 kb on - strand, within nuoF at 1495.128 kb on - strand, within nuoF at 1495.130 kb on - strand, within nuoF at 1495.218 kb on - strand, within nuoF at 1495.218 kb on - strand, within nuoF at 1495.218 kb on - strand, within nuoF at 1495.219 kb on + strand, within nuoF at 1495.219 kb on + strand, within nuoF at 1495.220 kb on - strand, within nuoF at 1495.220 kb on - strand, within nuoF at 1495.220 kb on - strand, within nuoF at 1495.239 kb on - strand, within nuoF at 1495.296 kb on - strand, within nuoF
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,491,523 - LU632_RS07965 0.56 +0.5 1,491,528 + LU632_RS07965 0.57 -0.8 1,491,528 + LU632_RS07965 0.57 -1.5 1,491,529 - LU632_RS07965 0.57 -0.5 1,491,714 + -0.0 1,491,727 + -1.4 1,491,728 - -1.0 1,491,843 + LU632_RS07970 0.16 -0.5 1,491,843 + LU632_RS07970 0.16 -2.0 1,491,844 - LU632_RS07970 0.17 +1.1 1,491,844 - LU632_RS07970 0.17 -0.9 1,491,844 - LU632_RS07970 0.17 -0.4 1,491,894 - LU632_RS07970 0.24 -0.8 1,491,936 + LU632_RS07970 0.30 +0.5 1,491,936 + LU632_RS07970 0.30 +1.2 1,491,936 + LU632_RS07970 0.30 -1.5 1,491,936 + LU632_RS07970 0.30 -0.2 1,491,937 - LU632_RS07970 0.30 +0.1 1,491,937 - LU632_RS07970 0.30 -2.0 1,491,966 + LU632_RS07970 0.35 -2.1 1,491,967 + LU632_RS07970 0.35 +0.8 1,491,968 - LU632_RS07970 0.35 -0.3 1,491,968 - LU632_RS07970 0.35 -0.5 1,491,968 - LU632_RS07970 0.35 -2.1 1,491,968 - LU632_RS07970 0.35 -0.5 1,492,029 - LU632_RS07970 0.44 +0.5 1,492,149 + LU632_RS07970 0.62 -3.3 1,492,150 - LU632_RS07970 0.62 -3.1 1,492,158 + LU632_RS07970 0.63 +0.5 1,492,203 + LU632_RS07970 0.70 -2.3 1,492,204 - LU632_RS07970 0.70 -0.5 1,492,206 - LU632_RS07970 0.70 +0.8 1,492,236 + LU632_RS07970 0.75 -0.9 1,492,237 - LU632_RS07970 0.75 -0.4 1,492,237 - LU632_RS07970 0.75 -1.7 1,492,237 - LU632_RS07970 0.75 -2.1 1,492,238 + LU632_RS07970 0.75 -1.5 1,492,239 - LU632_RS07970 0.75 -3.1 1,492,415 + -1.7 1,492,513 - -1.8 1,492,524 - +1.0 1,492,600 - -1.1 1,492,720 + nuoC LU632_RS07975 0.12 +0.1 1,492,720 + nuoC LU632_RS07975 0.12 -1.8 1,492,720 + nuoC LU632_RS07975 0.12 +0.5 1,492,896 + nuoC LU632_RS07975 0.21 -0.5 1,492,896 + nuoC LU632_RS07975 0.21 -1.5 1,492,896 + nuoC LU632_RS07975 0.21 +0.8 1,492,897 - nuoC LU632_RS07975 0.21 +0.3 1,492,951 - nuoC LU632_RS07975 0.24 -2.5 1,492,983 + nuoC LU632_RS07975 0.26 -1.5 1,493,154 + nuoC LU632_RS07975 0.36 -0.1 1,493,154 + nuoC LU632_RS07975 0.36 -1.5 1,493,154 + nuoC LU632_RS07975 0.36 +0.5 1,493,155 - nuoC LU632_RS07975 0.36 +0.3 1,493,311 + nuoC LU632_RS07975 0.44 -1.4 1,493,311 + nuoC LU632_RS07975 0.44 -1.8 1,493,311 + nuoC LU632_RS07975 0.44 +0.5 1,493,311 + nuoC LU632_RS07975 0.44 -1.9 1,493,311 + nuoC LU632_RS07975 0.44 -3.1 1,493,311 + nuoC LU632_RS07975 0.44 -2.8 1,493,311 + nuoC LU632_RS07975 0.44 -2.7 1,493,312 - nuoC LU632_RS07975 0.44 -1.5 1,493,312 - nuoC LU632_RS07975 0.44 -1.6 1,493,312 - nuoC LU632_RS07975 0.44 -0.6 1,493,312 - nuoC LU632_RS07975 0.44 -1.8 1,493,312 - nuoC LU632_RS07975 0.44 -2.2 1,493,312 - nuoC LU632_RS07975 0.44 -3.1 1,493,313 + nuoC LU632_RS07975 0.44 -0.1 1,493,313 + nuoC LU632_RS07975 0.44 +2.2 1,493,314 - nuoC LU632_RS07975 0.45 +0.2 1,493,454 + nuoC LU632_RS07975 0.52 -3.2 1,493,473 + nuoC LU632_RS07975 0.53 +0.5 1,493,473 + nuoC LU632_RS07975 0.53 -1.3 1,493,474 - nuoC LU632_RS07975 0.53 +1.9 1,493,474 - nuoC LU632_RS07975 0.53 -2.8 1,493,474 - nuoC LU632_RS07975 0.53 -2.3 1,493,474 - nuoC LU632_RS07975 0.53 -0.7 1,493,474 - nuoC LU632_RS07975 0.53 -0.6 1,493,475 + nuoC LU632_RS07975 0.53 -0.8 1,493,475 + nuoC LU632_RS07975 0.53 -1.8 1,493,475 + nuoC LU632_RS07975 0.53 -0.1 1,493,475 + nuoC LU632_RS07975 0.53 -2.7 1,493,476 - nuoC LU632_RS07975 0.54 -1.5 1,493,476 - nuoC LU632_RS07975 0.54 -3.0 1,493,476 - nuoC LU632_RS07975 0.54 +0.5 1,493,481 + nuoC LU632_RS07975 0.54 -1.1 1,493,482 - nuoC LU632_RS07975 0.54 -0.3 1,493,565 + nuoC LU632_RS07975 0.58 -2.3 1,493,690 - nuoC LU632_RS07975 0.65 -0.5 1,493,826 + nuoC LU632_RS07975 0.73 -1.5 1,494,009 + nuoC LU632_RS07975 0.83 -1.1 1,494,145 + -2.1 1,494,146 - -2.3 1,494,146 - -1.4 1,494,148 + -2.5 1,494,196 - -1.8 1,494,269 - -1.1 1,494,314 + -2.6 1,494,315 - -2.8 1,494,708 - nuoE LU632_RS07980 0.76 +1.8 1,494,773 + nuoE LU632_RS07980 0.89 -0.8 1,494,850 + +0.5 1,495,127 + nuoF LU632_RS07985 0.22 -1.5 1,495,128 - nuoF LU632_RS07985 0.22 -1.1 1,495,128 - nuoF LU632_RS07985 0.22 +0.9 1,495,130 - nuoF LU632_RS07985 0.22 -1.1 1,495,218 - nuoF LU632_RS07985 0.29 +1.2 1,495,218 - nuoF LU632_RS07985 0.29 -1.8 1,495,218 - nuoF LU632_RS07985 0.29 -1.1 1,495,219 + nuoF LU632_RS07985 0.29 -0.5 1,495,219 + nuoF LU632_RS07985 0.29 -1.8 1,495,220 - nuoF LU632_RS07985 0.29 -0.9 1,495,220 - nuoF LU632_RS07985 0.29 -1.1 1,495,220 - nuoF LU632_RS07985 0.29 -1.1 1,495,239 - nuoF LU632_RS07985 0.31 +0.1 1,495,296 - nuoF LU632_RS07985 0.35 -2.5
Or see this region's nucleotide sequence