Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07580

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS07565 and LU632_RS07570 overlap by 11 nucleotidesLU632_RS07570 and LU632_RS07575 overlap by 1 nucleotidesLU632_RS07575 and LU632_RS07580 overlap by 1 nucleotidesLU632_RS07580 and LU632_RS07585 are separated by 1 nucleotidesLU632_RS07585 and LU632_RS07590 are separated by 10 nucleotides LU632_RS07565: LU632_RS07565 - phage tail sheath subtilisin-like domain-containing protein, at 1,421,307 to 1,422,734 _RS07565 LU632_RS07570: LU632_RS07570 - hypothetical protein, at 1,422,724 to 1,422,975 _RS07570 LU632_RS07575: LU632_RS07575 - Gp37 family protein, at 1,422,975 to 1,423,439 _RS07575 LU632_RS07580: LU632_RS07580 - DUF1320 domain-containing protein, at 1,423,439 to 1,423,885 _RS07580 LU632_RS07585: LU632_RS07585 - DUF2190 family protein, at 1,423,887 to 1,424,243 _RS07585 LU632_RS07590: LU632_RS07590 - hypothetical protein, at 1,424,254 to 1,425,207 _RS07590 Position (kb) 1423 1424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1422.439 kb on - strand, within LU632_RS07565at 1422.465 kb on - strand, within LU632_RS07565at 1422.520 kb on + strand, within LU632_RS07565at 1422.521 kb on - strand, within LU632_RS07565at 1422.611 kb on + strandat 1422.721 kb on + strandat 1422.725 kb on + strandat 1422.726 kb on - strandat 1422.866 kb on + strand, within LU632_RS07570at 1422.866 kb on + strand, within LU632_RS07570at 1422.991 kb on + strandat 1422.991 kb on + strandat 1422.991 kb on + strandat 1422.992 kb on - strandat 1422.992 kb on - strandat 1423.023 kb on + strand, within LU632_RS07575at 1423.072 kb on + strand, within LU632_RS07575at 1423.072 kb on + strand, within LU632_RS07575at 1423.089 kb on + strand, within LU632_RS07575at 1423.090 kb on - strand, within LU632_RS07575at 1423.124 kb on + strand, within LU632_RS07575at 1423.303 kb on + strand, within LU632_RS07575at 1423.304 kb on - strand, within LU632_RS07575at 1423.304 kb on - strand, within LU632_RS07575at 1423.304 kb on - strand, within LU632_RS07575at 1423.367 kb on - strand, within LU632_RS07575at 1423.518 kb on - strand, within LU632_RS07580at 1423.881 kb on + strandat 1423.881 kb on + strandat 1423.881 kb on + strandat 1423.882 kb on - strandat 1423.882 kb on - strandat 1423.882 kb on - strandat 1423.882 kb on - strandat 1423.885 kb on + strandat 1423.886 kb on - strandat 1423.886 kb on - strandat 1423.886 kb on - strandat 1424.312 kb on + strandat 1424.312 kb on + strandat 1424.313 kb on - strandat 1424.317 kb on - strandat 1424.323 kb on - strandat 1424.325 kb on - strandat 1424.333 kb on + strandat 1424.334 kb on - strandat 1424.334 kb on - strandat 1424.360 kb on + strand, within LU632_RS07590at 1424.397 kb on + strand, within LU632_RS07590at 1424.398 kb on - strand, within LU632_RS07590at 1424.398 kb on - strand, within LU632_RS07590at 1424.460 kb on - strand, within LU632_RS07590at 1424.460 kb on - strand, within LU632_RS07590at 1424.699 kb on - strand, within LU632_RS07590at 1424.699 kb on - strand, within LU632_RS07590at 1424.712 kb on + strand, within LU632_RS07590at 1424.713 kb on - strand, within LU632_RS07590at 1424.716 kb on + strand, within LU632_RS07590at 1424.717 kb on - strand, within LU632_RS07590at 1424.717 kb on - strand, within LU632_RS07590at 1424.846 kb on + strand, within LU632_RS07590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
remove
1,422,439 - LU632_RS07565 0.79 +0.4
1,422,465 - LU632_RS07565 0.81 -2.5
1,422,520 + LU632_RS07565 0.85 +1.3
1,422,521 - LU632_RS07565 0.85 +0.0
1,422,611 + +0.8
1,422,721 + -0.2
1,422,725 + -1.0
1,422,726 - -1.4
1,422,866 + LU632_RS07570 0.56 -2.7
1,422,866 + LU632_RS07570 0.56 +1.8
1,422,991 + -0.8
1,422,991 + -0.4
1,422,991 + -2.3
1,422,992 - +0.3
1,422,992 - -2.6
1,423,023 + LU632_RS07575 0.10 +0.0
1,423,072 + LU632_RS07575 0.21 +0.7
1,423,072 + LU632_RS07575 0.21 +1.8
1,423,089 + LU632_RS07575 0.25 -1.0
1,423,090 - LU632_RS07575 0.25 -1.8
1,423,124 + LU632_RS07575 0.32 +0.0
1,423,303 + LU632_RS07575 0.71 +0.4
1,423,304 - LU632_RS07575 0.71 -0.8
1,423,304 - LU632_RS07575 0.71 +0.4
1,423,304 - LU632_RS07575 0.71 -0.2
1,423,367 - LU632_RS07575 0.84 -1.0
1,423,518 - LU632_RS07580 0.18 -1.1
1,423,881 + +1.0
1,423,881 + +2.1
1,423,881 + -1.4
1,423,882 - -1.8
1,423,882 - +0.2
1,423,882 - -1.4
1,423,882 - +1.1
1,423,885 + +0.6
1,423,886 - -2.1
1,423,886 - -0.5
1,423,886 - +1.6
1,424,312 + -0.8
1,424,312 + +0.6
1,424,313 - +1.1
1,424,317 - -0.4
1,424,323 - -0.8
1,424,325 - +4.3
1,424,333 + -0.6
1,424,334 - +1.7
1,424,334 - +0.9
1,424,360 + LU632_RS07590 0.11 -4.3
1,424,397 + LU632_RS07590 0.15 -3.0
1,424,398 - LU632_RS07590 0.15 +2.3
1,424,398 - LU632_RS07590 0.15 +2.2
1,424,460 - LU632_RS07590 0.22 +0.2
1,424,460 - LU632_RS07590 0.22 -0.5
1,424,699 - LU632_RS07590 0.47 -2.5
1,424,699 - LU632_RS07590 0.47 +1.1
1,424,712 + LU632_RS07590 0.48 +1.0
1,424,713 - LU632_RS07590 0.48 -0.6
1,424,716 + LU632_RS07590 0.48 +1.5
1,424,717 - LU632_RS07590 0.49 +0.3
1,424,717 - LU632_RS07590 0.49 -1.4
1,424,846 + LU632_RS07590 0.62 -0.0

Or see this region's nucleotide sequence