Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07110

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,344,774	+		LU632_RS07095	0.64	-0.5
1,344,778	+		LU632_RS07095	0.64	+0.5
1,344,778	+		LU632_RS07095	0.64	-0.6
1,344,778	+		LU632_RS07095	0.64	+3.6
1,344,778	+		LU632_RS07095	0.64	-0.5
1,344,792	+		LU632_RS07095	0.66	+1.9
1,344,792	+		LU632_RS07095	0.66	+0.1
1,344,793	-		LU632_RS07095	0.66	+0.9
1,344,793	-		LU632_RS07095	0.66	+0.5
1,344,835	-		LU632_RS07095	0.72	-1.2
1,344,905	+		LU632_RS07095	0.82	-1.3
1,344,905	+		LU632_RS07095	0.82	-1.5
1,344,905	+		LU632_RS07095	0.82	+0.5
1,344,906	-		LU632_RS07095	0.82	-1.3
1,344,906	-		LU632_RS07095	0.82	-0.5
1,344,960	+		LU632_RS07095	0.89	-1.1
1,344,993	+				-0.1
1,345,033	+				-2.0
1,345,034	-				-2.0
1,345,053	+				-1.5
1,345,053	+				-0.7
1,345,053	+				+1.3
1,345,053	+				+2.5
1,345,054	-				-0.6
1,345,054	-				-0.8
1,345,054	-				+2.1
1,345,169	-		LU632_RS07100	0.29	-0.3
1,345,169	-		LU632_RS07100	0.29	+0.9
1,345,258	+		LU632_RS07100	0.50	-2.0
1,345,258	+		LU632_RS07100	0.50	-2.0
1,345,259	-		LU632_RS07100	0.50	-2.8
1,345,259	-		LU632_RS07100	0.50	-2.8
1,345,259	-		LU632_RS07100	0.50	-1.8
1,345,259	-		LU632_RS07100	0.50	-2.0
1,345,282	-		LU632_RS07100	0.55	-0.3
1,345,358	-		LU632_RS07100	0.73	-0.0
1,345,358	-		LU632_RS07100	0.73	+1.4
1,345,359	+		LU632_RS07100	0.73	+0.5
1,345,359	+		LU632_RS07100	0.73	+1.5
1,345,359	+		LU632_RS07100	0.73	-0.3
1,345,360	-		LU632_RS07100	0.73	-1.8
1,345,360	-		LU632_RS07100	0.73	-0.5
1,345,418	+		LU632_RS07100	0.87	+1.9
1,345,418	+		LU632_RS07100	0.87	-1.7
1,345,418	+		LU632_RS07100	0.87	-1.8
1,345,421	+		LU632_RS07100	0.88	-1.9
1,345,472	-				-3.3
1,345,479	-		LU632_RS07105	0.17	-0.3
1,345,499	+		LU632_RS07105	0.23	+3.0
1,345,499	+		LU632_RS07105	0.23	+0.5
1,345,500	-		LU632_RS07105	0.23	-1.0
1,345,563	-		LU632_RS07105	0.43	+1.7
1,345,613	+		LU632_RS07105	0.59	-0.3
1,345,691	+		LU632_RS07105	0.83	-0.7
1,345,692	-		LU632_RS07105	0.83	+2.1
1,345,695	-		LU632_RS07105	0.84	-1.5
1,345,695	-		LU632_RS07105	0.84	+2.1
1,345,743	+				-0.0
1,345,874	-		LU632_RS07110	0.26	+0.2
1,345,874	-		LU632_RS07110	0.26	-1.6
1,346,006	+		LU632_RS07110	0.53	+2.0
1,346,007	-		LU632_RS07110	0.53	-0.5
1,346,025	+		LU632_RS07110	0.57	+0.2
1,346,025	+		LU632_RS07110	0.57	-0.5
1,346,026	-		LU632_RS07110	0.57	-0.1
1,346,026	-		LU632_RS07110	0.57	+1.1
1,346,026	-		LU632_RS07110	0.57	+0.3
1,346,060	+		LU632_RS07110	0.64	+0.5
1,346,060	+		LU632_RS07110	0.64	+3.0
1,346,061	-		LU632_RS07110	0.65	-0.0
1,346,061	-		LU632_RS07110	0.65	+1.1
1,346,196	+				+0.6
1,346,373	+				+1.0
1,346,574	+				+0.5
1,346,802	-		LU632_RS07115	0.24	+1.5
1,346,833	+		LU632_RS07115	0.26	+2.1
1,346,898	-		LU632_RS07115	0.31	-0.1
1,346,904	+		LU632_RS07115	0.31	+1.9
1,346,904	+		LU632_RS07115	0.31	+2.9
1,346,904	+		LU632_RS07115	0.31	+0.6
1,346,909	+		LU632_RS07115	0.31	-0.1
1,346,910	-		LU632_RS07115	0.31	+0.5
1,347,118	-		LU632_RS07115	0.45	+2.8
1,347,228	+		LU632_RS07115	0.52	-1.7
1,347,228	+		LU632_RS07115	0.52	+2.6
1,347,228	+		LU632_RS07115	0.52	+0.7
1,347,228	+		LU632_RS07115	0.52	+1.9
1,347,229	-		LU632_RS07115	0.52	-3.3
1,347,229	-		LU632_RS07115	0.52	+0.3