Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07005

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,333,320	-				+1.7
1,333,342	-				-1.0
1,333,529	+				-1.2
1,333,529	+				+2.1
1,333,529	+				+0.4
1,334,365	-		LU632_RS07005	0.45	-2.0
1,334,365	-		LU632_RS07005	0.45	-1.8
1,334,441	-		LU632_RS07005	0.81	-0.0
1,334,468	-				-2.8
1,334,481	-				-1.0
1,334,561	-				-1.6
1,334,561	-				-0.2
1,334,561	-				-1.3
1,334,561	-				-0.5
1,334,565	-				+1.0
1,334,569	-				-0.1
1,334,708	-		LU632_RS07010	0.39	+0.1
1,334,750	+		LU632_RS07010	0.53	-1.0
1,334,908	+				-1.0
1,334,912	+				+0.5
1,334,912	+				-0.3
1,334,912	+				+0.1
1,334,912	+				+3.2
1,334,936	+				+2.9
1,335,017	+		LU632_RS07015	0.15	+0.0
1,335,018	-		LU632_RS07015	0.15	-0.5
1,335,018	-		LU632_RS07015	0.15	-1.5
1,335,059	+		LU632_RS07015	0.21	-0.6
1,335,060	-		LU632_RS07015	0.21	+0.4
1,335,060	-		LU632_RS07015	0.21	-0.9
1,335,060	-		LU632_RS07015	0.21	+0.1
1,335,063	+		LU632_RS07015	0.21	-0.5
1,335,097	-		LU632_RS07015	0.26	+1.1
1,335,097	-		LU632_RS07015	0.26	-0.0
1,335,152	-		LU632_RS07015	0.34	+1.0
1,335,168	-		LU632_RS07015	0.36	+1.4
1,335,328	-		LU632_RS07015	0.59	-3.0
1,335,328	-		LU632_RS07015	0.59	-1.0
1,335,328	-		LU632_RS07015	0.59	-0.0