Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06970 and LU632_RS06975 are separated by 11 nucleotides LU632_RS06975 and LU632_RS06980 are separated by 78 nucleotides LU632_RS06980 and LU632_RS06985 are separated by 85 nucleotides LU632_RS06985 and LU632_RS06990 are separated by 186 nucleotides
LU632_RS06970: LU632_RS06970 - protease FtsH-inhibitory lysogeny factor CIII, at 1,330,873 to 1,331,004
_RS06970
LU632_RS06975: LU632_RS06975 - HNH endonuclease, at 1,331,016 to 1,331,507
_RS06975
LU632_RS06980: LU632_RS06980 - hypothetical protein, at 1,331,586 to 1,331,741
_RS06980
LU632_RS06985: LU632_RS06985 - hypothetical protein, at 1,331,827 to 1,332,180
_RS06985
LU632_RS06990: LU632_RS06990 - hypothetical protein, at 1,332,367 to 1,332,858
_RS06990
Position (kb) 1331
1332 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1331.110 kb on - strand, within LU632_RS06975 at 1331.607 kb on + strand, within LU632_RS06980 at 1331.608 kb on - strand, within LU632_RS06980 at 1331.694 kb on + strand, within LU632_RS06980 at 1332.060 kb on + strand, within LU632_RS06985 at 1332.228 kb on - strand at 1332.301 kb on - strand at 1332.415 kb on + strand at 1332.416 kb on - strand at 1332.493 kb on + strand, within LU632_RS06990 at 1332.524 kb on - strand, within LU632_RS06990 at 1332.559 kb on + strand, within LU632_RS06990 at 1332.591 kb on - strand, within LU632_RS06990 at 1332.711 kb on + strand, within LU632_RS06990 at 1332.712 kb on - strand, within LU632_RS06990
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 1,331,110 - LU632_RS06975 0.19 +1.3 1,331,607 + LU632_RS06980 0.13 -1.1 1,331,608 - LU632_RS06980 0.14 -2.4 1,331,694 + LU632_RS06980 0.69 -4.3 1,332,060 + LU632_RS06985 0.66 -0.1 1,332,228 - -0.5 1,332,301 - +1.3 1,332,415 + +0.6 1,332,416 - -1.5 1,332,493 + LU632_RS06990 0.26 +0.4 1,332,524 - LU632_RS06990 0.32 +0.5 1,332,559 + LU632_RS06990 0.39 +0.5 1,332,591 - LU632_RS06990 0.46 +0.7 1,332,711 + LU632_RS06990 0.70 +0.1 1,332,712 - LU632_RS06990 0.70 -0.9
Or see this region's nucleotide sequence