Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06665

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,280,236	-		LU632_RS06660	0.23	-1.5
1,281,117	+				-0.5
1,281,117	+				-0.9
1,281,131	+				+0.1
1,281,172	+				+0.3
1,281,172	+				+1.1
1,281,172	+				-0.4
1,281,275	+		LU632_RS06665	0.25	+0.5
1,281,514	+		LU632_RS06665	0.83	-1.4
1,281,518	+		LU632_RS06665	0.84	-0.5
1,281,518	+		LU632_RS06665	0.84	-2.0
1,281,519	-		LU632_RS06665	0.84	-1.8
1,281,719	-				+0.1
1,281,719	-				+0.9
1,281,725	+				+0.1
1,281,725	+				+0.5
1,281,741	-				-1.7
1,281,781	+				+0.8
1,281,781	+				+0.4
1,281,782	-				+0.3
1,281,782	-				+0.1
1,281,782	-				-3.8
1,281,880	+		LU632_RS06670	0.18	-0.6
1,281,892	+		LU632_RS06670	0.20	+1.0
1,281,893	-		LU632_RS06670	0.20	+1.6
1,281,893	-		LU632_RS06670	0.20	-0.0
1,281,942	-		LU632_RS06670	0.27	+0.5
1,281,968	-		LU632_RS06670	0.31	+1.7
1,282,027	+		LU632_RS06670	0.40	-2.3
1,282,028	-		LU632_RS06670	0.40	+0.1
1,282,028	-		LU632_RS06670	0.40	-0.6
1,282,135	+		LU632_RS06670	0.55	+6.4
1,282,267	+		LU632_RS06670	0.74	-1.0
1,282,267	+		LU632_RS06670	0.74	-3.0
1,282,268	-		LU632_RS06670	0.74	-1.8
1,282,268	-		LU632_RS06670	0.74	+2.7
1,282,268	-		LU632_RS06670	0.74	+0.9
1,282,302	+		LU632_RS06670	0.79	+1.4
1,282,319	-		LU632_RS06670	0.82	+0.4
1,282,401	+				+0.3
1,282,401	+				+1.8
1,282,438	-				-0.9
1,282,461	+				-1.5
1,282,462	-				+0.2
1,282,476	-				-1.8
1,282,556	-				+0.3
1,282,561	+				+0.5