Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05510

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,063,111	-				+1.2
1,063,111	-				+1.7
1,063,198	+				-0.1
1,063,198	+				+3.1
1,063,310	+				-0.1
1,063,322	+				+1.2
1,063,322	+				-1.5
1,063,323	-				+1.0
1,063,323	-				+0.3
1,063,401	-				-2.9
1,063,420	+				+0.1
1,063,421	-				+1.5
1,063,421	-				-0.5
1,063,501	+				-2.0
1,063,501	+				-0.1
1,063,507	+				+2.2
1,063,547	-				+0.2
1,063,548	+				+1.4
1,063,559	-				-3.2
1,063,599	+				+2.2
1,063,602	+				+0.6
1,063,738	+				+1.2
1,064,057	-	speA	LU632_RS05510	0.21	-2.0
1,064,768	-	speA	LU632_RS05510	0.57	-0.5
1,064,782	+	speA	LU632_RS05510	0.58	-2.0
1,065,014	-	speA	LU632_RS05510	0.69	-2.0
1,065,248	+	speA	LU632_RS05510	0.81	-2.0
1,065,419	-				-1.0
1,065,600	-				-0.5
1,065,687	+				+0.2
1,065,791	+				+2.3
1,066,094	+	speB	LU632_RS05515	0.33	+1.9
1,066,095	-	speB	LU632_RS05515	0.33	-3.0
1,066,248	+	speB	LU632_RS05515	0.50	-0.5
1,066,462	-	speB	LU632_RS05515	0.73	-2.3
1,066,515	-	speB	LU632_RS05515	0.78	+0.5