Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS05235

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
1,011,950	-		LU632_RS05230	0.43	-1.0
1,012,050	+		LU632_RS05230	0.50	+0.6
1,012,051	-		LU632_RS05230	0.50	+1.7
1,012,051	-		LU632_RS05230	0.50	+1.5
1,012,238	+		LU632_RS05230	0.62	+0.4
1,012,238	+		LU632_RS05230	0.62	+0.5
1,012,238	+		LU632_RS05230	0.62	+3.4
1,012,238	+		LU632_RS05230	0.62	-0.4
1,012,238	+		LU632_RS05230	0.62	-0.9
1,012,238	+		LU632_RS05230	0.62	-1.1
1,012,239	-		LU632_RS05230	0.62	+1.6
1,012,239	-		LU632_RS05230	0.62	-1.7
1,012,239	-		LU632_RS05230	0.62	-0.6
1,012,239	-		LU632_RS05230	0.62	+2.5
1,012,239	-		LU632_RS05230	0.62	-2.0
1,012,241	-		LU632_RS05230	0.62	-1.4
1,012,353	+		LU632_RS05230	0.69	+0.2
1,012,353	+		LU632_RS05230	0.69	+0.5
1,012,354	-		LU632_RS05230	0.70	+1.5
1,012,354	-		LU632_RS05230	0.70	-0.7
1,012,354	-		LU632_RS05230	0.70	+1.2
1,012,402	+		LU632_RS05230	0.73	-0.4
1,012,438	+		LU632_RS05230	0.75	-0.4
1,012,447	-		LU632_RS05230	0.76	-1.1
1,012,549	+		LU632_RS05230	0.82	+0.3
1,012,625	+		LU632_RS05230	0.87	+0.6
1,012,626	-		LU632_RS05230	0.87	+4.5
1,012,626	-		LU632_RS05230	0.87	-2.9
1,012,689	+				+0.5
1,012,690	-				-0.0
1,012,690	-				-0.8
1,012,690	-				+0.7
1,012,737	-				-1.2
1,012,784	+				-2.6
1,012,819	+				-2.3
1,012,819	+				-1.1
1,012,827	+				+1.7
1,012,827	+				-0.4
1,012,827	+				-1.2
1,012,828	-				-0.8
1,012,831	+				-0.6
1,012,831	+				+0.0
1,012,832	-				+1.7
1,012,832	-				+0.4
1,012,832	-				-1.7
1,012,839	+				+2.9
1,012,840	-				-0.1
1,012,856	+				+1.3
1,012,877	+				+0.3
1,012,966	+		LU632_RS05235	0.38	-0.7
1,013,028	+		LU632_RS05235	0.59	-1.7
1,013,092	+		LU632_RS05235	0.81	-0.8
1,013,093	-		LU632_RS05235	0.82	+0.4
1,013,093	-		LU632_RS05235	0.82	-1.7
1,013,101	+		LU632_RS05235	0.85	-1.0
1,013,162	-				-2.0
1,013,447	+				-1.0
1,013,448	-				-1.0
1,013,452	-				+0.5
1,013,452	-				-3.6
1,013,452	-				-3.3
1,013,469	+				-0.2
1,013,620	+	umuD	LU632_RS05240	0.33	+1.3
1,013,620	+	umuD	LU632_RS05240	0.33	-0.3
1,013,621	-	umuD	LU632_RS05240	0.34	-0.1
1,013,621	-	umuD	LU632_RS05240	0.34	+0.4
1,013,621	-	umuD	LU632_RS05240	0.34	+0.5
1,013,673	+	umuD	LU632_RS05240	0.44	-0.4
1,013,677	+	umuD	LU632_RS05240	0.45	-2.2
1,013,678	-	umuD	LU632_RS05240	0.45	-0.7
1,013,678	-	umuD	LU632_RS05240	0.45	+0.5
1,013,805	+	umuD	LU632_RS05240	0.70	+0.6
1,013,806	-	umuD	LU632_RS05240	0.70	-1.9
1,013,806	-	umuD	LU632_RS05240	0.70	+0.8
1,013,812	-	umuD	LU632_RS05240	0.71	+3.5
1,013,812	-	umuD	LU632_RS05240	0.71	-2.2
1,013,812	-	umuD	LU632_RS05240	0.71	+1.0
1,013,812	-	umuD	LU632_RS05240	0.71	+0.8
1,013,874	-	umuD	LU632_RS05240	0.84	-2.7
1,013,874	-	umuD	LU632_RS05240	0.84	-2.2
1,013,895	+	umuD	LU632_RS05240	0.88	-0.3
1,013,988	+				+0.4
1,013,988	+				+1.3
1,013,989	-				-0.6