Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04915 and LU632_RS04920 are separated by 194 nucleotides LU632_RS04920 and LU632_RS04925 overlap by 4 nucleotides LU632_RS04925 and LU632_RS04930 are separated by 6 nucleotides
LU632_RS04915: LU632_RS04915 - IS4 family transposase, at 958,299 to 959,621
_RS04915
LU632_RS04920: LU632_RS04920 - PilL N-terminal domain-containing protein, at 959,816 to 960,412
_RS04920
LU632_RS04925: LU632_RS04925 - hypothetical protein, at 960,409 to 961,131
_RS04925
LU632_RS04930: LU632_RS04930 - TIGR03759 family integrating conjugative element protein, at 961,138 to 961,842
_RS04930
Position (kb) 960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 959.793 kb on - strand at 959.793 kb on - strand at 959.836 kb on + strand at 959.837 kb on - strand at 959.979 kb on - strand, within LU632_RS04920 at 960.005 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.070 kb on + strand, within LU632_RS04920 at 960.076 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.078 kb on + strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.079 kb on - strand, within LU632_RS04920 at 960.083 kb on - strand, within LU632_RS04920 at 960.128 kb on - strand, within LU632_RS04920 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.492 kb on + strand, within LU632_RS04925 at 960.524 kb on + strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.525 kb on - strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.529 kb on + strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.530 kb on - strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.591 kb on + strand, within LU632_RS04925 at 960.594 kb on + strand, within LU632_RS04925 at 961.020 kb on - strand, within LU632_RS04925 at 961.119 kb on + strand at 961.137 kb on + strand at 961.203 kb on + strand at 961.204 kb on - strand at 961.204 kb on - strand at 961.644 kb on + strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.645 kb on - strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.648 kb on + strand, within LU632_RS04930 at 961.649 kb on - strand, within LU632_RS04930 at 961.678 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.683 kb on - strand, within LU632_RS04930 at 961.740 kb on + strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.741 kb on - strand, within LU632_RS04930 at 961.827 kb on + strand at 961.828 kb on - strand at 961.905 kb on + strand at 961.906 kb on - strand at 961.906 kb on - strand at 961.933 kb on + strand at 962.058 kb on - strand at 962.058 kb on - strand at 962.123 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 959,793 - +0.0 959,793 - -3.1 959,836 + -0.9 959,837 - +1.3 959,979 - LU632_RS04920 0.27 +0.3 960,005 + LU632_RS04920 0.32 -0.2 960,070 + LU632_RS04920 0.43 -1.4 960,070 + LU632_RS04920 0.43 +0.6 960,070 + LU632_RS04920 0.43 -0.5 960,076 + LU632_RS04920 0.44 +2.9 960,078 + LU632_RS04920 0.44 -0.8 960,078 + LU632_RS04920 0.44 +0.1 960,078 + LU632_RS04920 0.44 +0.8 960,078 + LU632_RS04920 0.44 +0.6 960,078 + LU632_RS04920 0.44 -3.1 960,078 + LU632_RS04920 0.44 +1.9 960,078 + LU632_RS04920 0.44 -0.5 960,078 + LU632_RS04920 0.44 -2.4 960,078 + LU632_RS04920 0.44 +2.8 960,078 + LU632_RS04920 0.44 +0.6 960,078 + LU632_RS04920 0.44 -2.1 960,078 + LU632_RS04920 0.44 +0.7 960,079 - LU632_RS04920 0.44 +0.0 960,079 - LU632_RS04920 0.44 +2.2 960,079 - LU632_RS04920 0.44 -1.4 960,079 - LU632_RS04920 0.44 -0.7 960,079 - LU632_RS04920 0.44 +1.2 960,079 - LU632_RS04920 0.44 +0.4 960,079 - LU632_RS04920 0.44 +1.4 960,079 - LU632_RS04920 0.44 -0.8 960,083 - LU632_RS04920 0.45 -0.4 960,128 - LU632_RS04920 0.52 -2.7 960,492 + LU632_RS04925 0.11 +0.6 960,492 + LU632_RS04925 0.11 -0.3 960,492 + LU632_RS04925 0.11 +0.8 960,524 + LU632_RS04925 0.16 -0.1 960,525 - LU632_RS04925 0.16 +1.9 960,525 - LU632_RS04925 0.16 -0.3 960,529 + LU632_RS04925 0.17 +1.5 960,529 + LU632_RS04925 0.17 +0.0 960,530 - LU632_RS04925 0.17 -2.2 960,530 - LU632_RS04925 0.17 -0.1 960,591 + LU632_RS04925 0.25 -2.0 960,591 + LU632_RS04925 0.25 +0.5 960,591 + LU632_RS04925 0.25 +2.2 960,594 + LU632_RS04925 0.26 +0.3 961,020 - LU632_RS04925 0.85 +0.8 961,119 + -0.7 961,137 + -1.0 961,203 + -1.8 961,204 - -2.4 961,204 - -0.3 961,644 + LU632_RS04930 0.72 -2.4 961,645 - LU632_RS04930 0.72 +0.3 961,645 - LU632_RS04930 0.72 -2.0 961,648 + LU632_RS04930 0.72 -2.0 961,648 + LU632_RS04930 0.72 -1.0 961,649 - LU632_RS04930 0.72 -1.7 961,678 - LU632_RS04930 0.77 +0.0 961,683 - LU632_RS04930 0.77 +1.6 961,683 - LU632_RS04930 0.77 +0.5 961,740 + LU632_RS04930 0.85 +0.3 961,741 - LU632_RS04930 0.86 +1.6 961,741 - LU632_RS04930 0.86 -1.7 961,827 + +2.6 961,828 - -1.7 961,905 + -3.5 961,906 - +2.1 961,906 - -1.7 961,933 + -1.7 962,058 - -0.4 962,058 - -0.8 962,123 + +1.4
Or see this region's nucleotide sequence