Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04735 and LU632_RS04740 are separated by 69 nucleotides LU632_RS04740 and LU632_RS04745 are separated by 52 nucleotides LU632_RS04745 and LU632_RS04750 are separated by 407 nucleotides
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
LU632_RS04740: LU632_RS04740 - DNA topoisomerase IV subunit B, at 932,268 to 932,570
_RS04740
LU632_RS04745: LU632_RS04745 - IS3 family transposase, at 932,623 to 933,792
_RS04745
LU632_RS04750: LU632_RS04750 - ATP-binding domain-containing protein, at 934,200 to 934,996
_RS04750
Position (kb) 932
933
934 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.704 kb on - strand, within LU632_RS04735 at 931.707 kb on + strand, within LU632_RS04735 at 931.708 kb on - strand, within LU632_RS04735 at 931.716 kb on - strand, within LU632_RS04735 at 931.743 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.775 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.821 kb on + strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.822 kb on - strand, within LU632_RS04735 at 931.848 kb on - strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.906 kb on + strand, within LU632_RS04735 at 931.907 kb on - strand, within LU632_RS04735 at 931.995 kb on - strand at 932.312 kb on + strand, within LU632_RS04740 at 932.313 kb on - strand, within LU632_RS04740 at 932.555 kb on - strand at 932.578 kb on - strand at 932.578 kb on - strand at 933.852 kb on + strand at 933.852 kb on + strand at 933.852 kb on + strand at 933.852 kb on + strand at 933.863 kb on + strand at 933.866 kb on + strand at 933.875 kb on + strand at 933.883 kb on - strand at 933.886 kb on + strand at 933.886 kb on + strand at 933.886 kb on + strand at 933.886 kb on + strand at 933.886 kb on - strand at 933.887 kb on - strand at 933.916 kb on - strand at 933.965 kb on + strand at 933.993 kb on + strand at 933.994 kb on - strand at 933.997 kb on - strand at 934.067 kb on + strand at 934.068 kb on - strand at 934.070 kb on + strand at 934.286 kb on + strand, within LU632_RS04750 at 934.287 kb on - strand, within LU632_RS04750 at 934.342 kb on - strand, within LU632_RS04750 at 934.350 kb on + strand, within LU632_RS04750 at 934.350 kb on + strand, within LU632_RS04750 at 934.478 kb on + strand, within LU632_RS04750 at 934.479 kb on - strand, within LU632_RS04750 at 934.502 kb on - strand, within LU632_RS04750 at 934.583 kb on + strand, within LU632_RS04750 at 934.649 kb on + strand, within LU632_RS04750 at 934.650 kb on - strand, within LU632_RS04750
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 931,704 - LU632_RS04735 0.76 +0.6 931,704 - LU632_RS04735 0.76 +3.8 931,704 - LU632_RS04735 0.76 -2.0 931,707 + LU632_RS04735 0.76 +2.6 931,708 - LU632_RS04735 0.76 +1.2 931,716 - LU632_RS04735 0.76 +2.1 931,743 + LU632_RS04735 0.78 +1.3 931,775 + LU632_RS04735 0.79 -0.3 931,775 + LU632_RS04735 0.79 -1.7 931,821 + LU632_RS04735 0.82 +0.6 931,821 + LU632_RS04735 0.82 +0.6 931,821 + LU632_RS04735 0.82 +0.3 931,821 + LU632_RS04735 0.82 -1.9 931,821 + LU632_RS04735 0.82 -1.5 931,821 + LU632_RS04735 0.82 +1.5 931,822 - LU632_RS04735 0.82 -1.0 931,822 - LU632_RS04735 0.82 -0.4 931,848 - LU632_RS04735 0.83 -0.7 931,906 + LU632_RS04735 0.86 -0.7 931,906 + LU632_RS04735 0.86 +1.8 931,906 + LU632_RS04735 0.86 -0.4 931,907 - LU632_RS04735 0.86 -1.7 931,995 - -0.3 932,312 + LU632_RS04740 0.15 -3.6 932,313 - LU632_RS04740 0.15 +0.6 932,555 - -0.4 932,578 - -0.9 932,578 - +0.0 933,852 + +2.5 933,852 + -1.7 933,852 + +1.6 933,852 + +2.0 933,863 + +1.5 933,866 + -1.1 933,875 + +1.1 933,883 - +0.2 933,886 + +1.7 933,886 + +0.2 933,886 + -2.9 933,886 + -1.2 933,886 - +1.5 933,887 - +0.9 933,916 - +1.3 933,965 + +2.3 933,993 + -0.6 933,994 - -4.0 933,997 - -0.1 934,067 + +3.1 934,068 - -1.1 934,070 + +1.4 934,286 + LU632_RS04750 0.11 -1.7 934,287 - LU632_RS04750 0.11 +1.5 934,342 - LU632_RS04750 0.18 +0.6 934,350 + LU632_RS04750 0.19 -2.7 934,350 + LU632_RS04750 0.19 +2.5 934,478 + LU632_RS04750 0.35 +0.6 934,479 - LU632_RS04750 0.35 +0.0 934,502 - LU632_RS04750 0.38 +1.8 934,583 + LU632_RS04750 0.48 +1.6 934,649 + LU632_RS04750 0.56 +1.3 934,650 - LU632_RS04750 0.56 -3.3
Or see this region's nucleotide sequence