Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04725 and LU632_RS04730 are separated by 126 nucleotides LU632_RS04730 and LU632_RS04735 are separated by 132 nucleotides
LU632_RS04725: LU632_RS04725 - transporter substrate-binding domain-containing protein, at 926,307 to 929,459
_RS04725
LU632_RS04730: LU632_RS04730 - DUF1090 domain-containing protein, at 929,586 to 930,020
_RS04730
LU632_RS04735: LU632_RS04735 - fimbria/pilus outer membrane usher protein, at 930,153 to 932,198
_RS04735
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.603 kb on - strand, within LU632_RS04725 at 928.604 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.723 kb on + strand, within LU632_RS04725 at 928.724 kb on - strand, within LU632_RS04725 at 928.731 kb on - strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.732 kb on + strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.733 kb on - strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.807 kb on + strand, within LU632_RS04725 at 928.808 kb on - strand, within LU632_RS04725 at 928.923 kb on - strand, within LU632_RS04725 at 928.957 kb on + strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.958 kb on - strand, within LU632_RS04725 at 928.972 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.082 kb on - strand, within LU632_RS04725 at 929.395 kb on + strand at 929.413 kb on + strand at 929.469 kb on + strand at 929.470 kb on - strand at 929.470 kb on - strand at 929.518 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.563 kb on + strand at 929.631 kb on - strand, within LU632_RS04730 at 929.631 kb on - strand, within LU632_RS04730 at 929.727 kb on - strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.780 kb on + strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.781 kb on - strand, within LU632_RS04730 at 929.783 kb on + strand, within LU632_RS04730 at 929.892 kb on - strand, within LU632_RS04730 at 929.904 kb on - strand, within LU632_RS04730 at 930.014 kb on + strand at 930.014 kb on + strand at 930.019 kb on - strand at 930.173 kb on + strand at 930.173 kb on + strand at 930.449 kb on + strand, within LU632_RS04735 at 930.471 kb on - strand, within LU632_RS04735 at 930.539 kb on + strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.573 kb on - strand, within LU632_RS04735 at 930.679 kb on - strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.680 kb on + strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.681 kb on - strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.704 kb on + strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.705 kb on - strand, within LU632_RS04735 at 930.812 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735 at 930.992 kb on + strand, within LU632_RS04735
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 928,603 - LU632_RS04725 0.73 +0.6 928,603 - LU632_RS04725 0.73 +0.6 928,603 - LU632_RS04725 0.73 +0.9 928,604 + LU632_RS04725 0.73 +0.0 928,723 + LU632_RS04725 0.77 -0.6 928,723 + LU632_RS04725 0.77 +0.4 928,724 - LU632_RS04725 0.77 -0.7 928,731 - LU632_RS04725 0.77 +0.3 928,732 + LU632_RS04725 0.77 +1.8 928,732 + LU632_RS04725 0.77 +0.5 928,732 + LU632_RS04725 0.77 +1.3 928,733 - LU632_RS04725 0.77 -0.1 928,733 - LU632_RS04725 0.77 -1.0 928,807 + LU632_RS04725 0.79 -2.2 928,807 + LU632_RS04725 0.79 -1.0 928,808 - LU632_RS04725 0.79 -0.7 928,923 - LU632_RS04725 0.83 +1.2 928,957 + LU632_RS04725 0.84 -1.0 928,958 - LU632_RS04725 0.84 +2.2 928,958 - LU632_RS04725 0.84 +2.3 928,972 - LU632_RS04725 0.85 -1.4 929,082 - LU632_RS04725 0.88 -0.6 929,082 - LU632_RS04725 0.88 +0.4 929,395 + -1.6 929,413 + -1.9 929,469 + -2.0 929,470 - +0.0 929,470 - +0.9 929,518 + +0.6 929,563 + -0.5 929,563 + -0.4 929,563 + -0.1 929,563 + -2.2 929,631 - LU632_RS04730 0.10 +0.6 929,631 - LU632_RS04730 0.10 +1.7 929,727 - LU632_RS04730 0.32 +0.6 929,780 + LU632_RS04730 0.45 +0.2 929,780 + LU632_RS04730 0.45 +1.2 929,781 - LU632_RS04730 0.45 -0.3 929,781 - LU632_RS04730 0.45 -1.0 929,783 + LU632_RS04730 0.45 +0.5 929,892 - LU632_RS04730 0.70 -0.3 929,904 - LU632_RS04730 0.73 -0.3 930,014 + +0.6 930,014 + +0.0 930,019 - +0.0 930,173 + -0.5 930,173 + -0.4 930,449 + LU632_RS04735 0.14 -3.3 930,471 - LU632_RS04735 0.16 +0.3 930,539 + LU632_RS04735 0.19 -3.6 930,573 - LU632_RS04735 0.21 -0.6 930,573 - LU632_RS04735 0.21 -1.3 930,679 - LU632_RS04735 0.26 +2.5 930,680 + LU632_RS04735 0.26 -1.0 930,680 + LU632_RS04735 0.26 +2.8 930,680 + LU632_RS04735 0.26 +0.1 930,681 - LU632_RS04735 0.26 -1.0 930,681 - LU632_RS04735 0.26 +1.0 930,704 + LU632_RS04735 0.27 +0.6 930,704 + LU632_RS04735 0.27 +0.9 930,704 + LU632_RS04735 0.27 -3.0 930,704 + LU632_RS04735 0.27 -0.7 930,705 - LU632_RS04735 0.27 -0.1 930,705 - LU632_RS04735 0.27 -0.4 930,812 + LU632_RS04735 0.32 +1.2 930,992 + LU632_RS04735 0.41 +0.1 930,992 + LU632_RS04735 0.41 +2.2
Or see this region's nucleotide sequence