Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04415

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04410 and LU632_RS04415 are separated by 30 nucleotidesLU632_RS04415 and LU632_RS04420 are separated by 134 nucleotidesLU632_RS04420 and LU632_RS04425 are separated by 571 nucleotides LU632_RS04410: LU632_RS04410 - Tn3 family transposase, at 869,812 to 872,322 _RS04410 LU632_RS04415: LU632_RS04415 - IS91 family transposase, at 872,353 to 873,576 _RS04415 LU632_RS04420: LU632_RS04420 - hypothetical protein, at 873,711 to 873,869 _RS04420 LU632_RS04425: LU632_RS04425 - DNA-binding protein, at 874,441 to 874,797 _RS04425 Position (kb) 872 873 874Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 871.681 kb on - strand, within LU632_RS04410at 871.910 kb on - strand, within LU632_RS04410at 874.095 kb on + strandat 874.247 kb on - strandat 874.321 kb on + strandat 874.321 kb on + strandat 874.545 kb on + strand, within LU632_RS04425at 874.546 kb on - strand, within LU632_RS04425

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
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871,681 - LU632_RS04410 0.74 -1.1
871,910 - LU632_RS04410 0.84 -0.2
874,095 + -0.3
874,247 - -2.9
874,321 + -1.7
874,321 + +2.1
874,545 + LU632_RS04425 0.29 +1.9
874,546 - LU632_RS04425 0.29 +0.5

Or see this region's nucleotide sequence