Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04360 and LU632_RS04365 are separated by 20 nucleotides LU632_RS04365 and LU632_RS04370 are separated by 608 nucleotides LU632_RS04370 and LU632_RS04375 are separated by 140 nucleotides
LU632_RS04360: LU632_RS04360 - VRR-NUC domain-containing protein, at 862,895 to 863,426
_RS04360
LU632_RS04365: LU632_RS04365 - IS5/IS1182 family transposase, at 863,447 to 863,548
_RS04365
LU632_RS04370: LU632_RS04370 - hypothetical protein, at 864,157 to 864,387
_RS04370
LU632_RS04375: LU632_RS04375 - IS91 family transposase, at 864,528 to 865,751
_RS04375
Position (kb) 864
865 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 863.236 kb on + strand, within LU632_RS04360 at 863.236 kb on + strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.237 kb on - strand, within LU632_RS04360 at 863.288 kb on + strand, within LU632_RS04360 at 863.292 kb on + strand, within LU632_RS04360 at 863.423 kb on + strand at 863.424 kb on - strand at 863.480 kb on - strand, within LU632_RS04365 at 863.612 kb on + strand at 863.612 kb on + strand at 863.655 kb on - strand at 863.655 kb on - strand at 863.659 kb on - strand at 863.659 kb on - strand at 863.663 kb on + strand at 863.663 kb on + strand at 863.664 kb on - strand at 863.683 kb on - strand at 863.795 kb on + strand at 863.806 kb on + strand at 863.972 kb on - strand at 864.042 kb on - strand at 864.042 kb on - strand at 864.042 kb on - strand at 864.075 kb on + strand at 864.075 kb on + strand at 864.076 kb on - strand at 864.102 kb on - strand at 864.122 kb on + strand at 864.122 kb on + strand at 864.122 kb on + strand at 864.123 kb on - strand at 864.126 kb on + strand at 864.126 kb on + strand at 864.177 kb on + strand at 864.229 kb on - strand, within LU632_RS04370 at 864.252 kb on + strand, within LU632_RS04370 at 864.272 kb on + strand, within LU632_RS04370 at 864.342 kb on - strand, within LU632_RS04370 at 864.342 kb on - strand, within LU632_RS04370 at 864.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 863,236 + LU632_RS04360 0.64 +0.4 863,236 + LU632_RS04360 0.64 +1.8 863,237 - LU632_RS04360 0.64 -0.6 863,237 - LU632_RS04360 0.64 -0.7 863,237 - LU632_RS04360 0.64 -0.4 863,288 + LU632_RS04360 0.74 +0.6 863,292 + LU632_RS04360 0.75 +4.6 863,423 + +2.2 863,424 - -0.6 863,480 - LU632_RS04365 0.32 -1.7 863,612 + -0.8 863,612 + -1.0 863,655 - +0.5 863,655 - +0.3 863,659 - -1.7 863,659 - -0.7 863,663 + +0.8 863,663 + +0.5 863,664 - +0.7 863,683 - -0.1 863,795 + +2.3 863,806 + -0.5 863,972 - -0.5 864,042 - -1.0 864,042 - -1.6 864,042 - +1.7 864,075 + +0.8 864,075 + -1.4 864,076 - -0.5 864,102 - +0.6 864,122 + +0.3 864,122 + -0.7 864,122 + -1.4 864,123 - +0.6 864,126 + +0.6 864,126 + +4.8 864,177 + -0.4 864,229 - LU632_RS04370 0.31 -0.2 864,252 + LU632_RS04370 0.41 +0.1 864,272 + LU632_RS04370 0.50 +0.8 864,342 - LU632_RS04370 0.80 +0.2 864,342 - LU632_RS04370 0.80 +1.0 864,415 - -0.5
Or see this region's nucleotide sequence