Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssG and LU632_RS03875 are separated by 46 nucleotides LU632_RS03875 and tssH are separated by 422 nucleotides
LU632_RS03870: tssG - type VI secretion system baseplate subunit TssG, at 771,713 to 772,766
tssG
LU632_RS03875: LU632_RS03875 - DUF4225 domain-containing protein, at 772,813 to 773,574
_RS03875
LU632_RS03880: tssH - type VI secretion system ATPase TssH, at 773,997 to 776,612
tssH
Position (kb) 772
773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 771.985 kb on + strand, within tssG at 771.986 kb on - strand, within tssG at 772.066 kb on - strand, within tssG at 772.184 kb on + strand, within tssG at 772.184 kb on + strand, within tssG at 772.185 kb on - strand, within tssG at 772.185 kb on - strand, within tssG at 772.185 kb on - strand, within tssG at 772.344 kb on + strand, within tssG at 772.345 kb on - strand, within tssG at 772.345 kb on - strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.621 kb on + strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.622 kb on - strand, within tssG at 772.774 kb on - strand at 772.920 kb on + strand, within LU632_RS03875 at 772.931 kb on + strand, within LU632_RS03875 at 772.940 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.986 kb on + strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 772.987 kb on - strand, within LU632_RS03875 at 773.075 kb on + strand, within LU632_RS03875 at 773.076 kb on - strand, within LU632_RS03875 at 773.076 kb on - strand, within LU632_RS03875 at 773.081 kb on - strand, within LU632_RS03875 at 773.081 kb on - strand, within LU632_RS03875 at 773.145 kb on - strand, within LU632_RS03875 at 773.198 kb on + strand, within LU632_RS03875 at 773.272 kb on + strand, within LU632_RS03875 at 773.272 kb on + strand, within LU632_RS03875 at 773.273 kb on - strand, within LU632_RS03875 at 773.367 kb on - strand, within LU632_RS03875 at 773.367 kb on - strand, within LU632_RS03875 at 773.377 kb on - strand, within LU632_RS03875 at 773.399 kb on - strand, within LU632_RS03875 at 773.400 kb on - strand, within LU632_RS03875 at 773.401 kb on + strand, within LU632_RS03875 at 773.556 kb on - strand at 773.556 kb on - strand at 773.578 kb on - strand at 773.589 kb on - strand at 773.589 kb on - strand at 773.854 kb on - strand at 773.854 kb on - strand at 774.039 kb on - strand at 774.046 kb on + strand at 774.047 kb on - strand at 774.097 kb on + strand at 774.099 kb on + strand at 774.099 kb on + strand at 774.121 kb on + strand at 774.121 kb on + strand at 774.121 kb on + strand at 774.122 kb on - strand at 774.155 kb on - strand at 774.155 kb on - strand at 774.346 kb on + strand, within tssH at 774.547 kb on - strand, within tssH
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 771,985 + tssG LU632_RS03870 0.26 -1.8 771,986 - tssG LU632_RS03870 0.26 -0.4 772,066 - tssG LU632_RS03870 0.33 -1.2 772,184 + tssG LU632_RS03870 0.45 +3.3 772,184 + tssG LU632_RS03870 0.45 -2.4 772,185 - tssG LU632_RS03870 0.45 -0.9 772,185 - tssG LU632_RS03870 0.45 +0.7 772,185 - tssG LU632_RS03870 0.45 -2.2 772,344 + tssG LU632_RS03870 0.60 -0.9 772,345 - tssG LU632_RS03870 0.60 +1.6 772,345 - tssG LU632_RS03870 0.60 -2.0 772,621 + tssG LU632_RS03870 0.86 +0.0 772,621 + tssG LU632_RS03870 0.86 +3.3 772,621 + tssG LU632_RS03870 0.86 -1.2 772,621 + tssG LU632_RS03870 0.86 -0.3 772,621 + tssG LU632_RS03870 0.86 -0.4 772,621 + tssG LU632_RS03870 0.86 -2.3 772,621 + tssG LU632_RS03870 0.86 +0.0 772,621 + tssG LU632_RS03870 0.86 -0.6 772,622 - tssG LU632_RS03870 0.86 +4.5 772,622 - tssG LU632_RS03870 0.86 -0.3 772,622 - tssG LU632_RS03870 0.86 +0.3 772,622 - tssG LU632_RS03870 0.86 +0.5 772,622 - tssG LU632_RS03870 0.86 -1.8 772,622 - tssG LU632_RS03870 0.86 +1.4 772,622 - tssG LU632_RS03870 0.86 -1.3 772,622 - tssG LU632_RS03870 0.86 +2.6 772,774 - -1.9 772,920 + LU632_RS03875 0.14 +0.9 772,931 + LU632_RS03875 0.15 -0.8 772,940 + LU632_RS03875 0.17 +1.7 772,986 + LU632_RS03875 0.23 -0.6 772,986 + LU632_RS03875 0.23 -3.0 772,986 + LU632_RS03875 0.23 +0.7 772,986 + LU632_RS03875 0.23 -0.9 772,986 + LU632_RS03875 0.23 -2.6 772,986 + LU632_RS03875 0.23 -0.9 772,987 - LU632_RS03875 0.23 +1.3 772,987 - LU632_RS03875 0.23 -1.2 772,987 - LU632_RS03875 0.23 -2.1 772,987 - LU632_RS03875 0.23 -1.6 772,987 - LU632_RS03875 0.23 -0.4 772,987 - LU632_RS03875 0.23 -2.4 772,987 - LU632_RS03875 0.23 -0.3 773,075 + LU632_RS03875 0.34 -0.9 773,076 - LU632_RS03875 0.35 +1.8 773,076 - LU632_RS03875 0.35 -3.7 773,081 - LU632_RS03875 0.35 -1.3 773,081 - LU632_RS03875 0.35 +3.8 773,145 - LU632_RS03875 0.44 -1.6 773,198 + LU632_RS03875 0.51 -0.6 773,272 + LU632_RS03875 0.60 +1.3 773,272 + LU632_RS03875 0.60 -0.4 773,273 - LU632_RS03875 0.60 -2.5 773,367 - LU632_RS03875 0.73 +0.2 773,367 - LU632_RS03875 0.73 +1.5 773,377 - LU632_RS03875 0.74 +0.1 773,399 - LU632_RS03875 0.77 +0.3 773,400 - LU632_RS03875 0.77 +0.0 773,401 + LU632_RS03875 0.77 -2.5 773,556 - +0.7 773,556 - +2.1 773,578 - +0.0 773,589 - +2.0 773,589 - -3.1 773,854 - -1.6 773,854 - +2.0 774,039 - -1.0 774,046 + -0.6 774,047 - -1.2 774,097 + +0.7 774,099 + -2.9 774,099 + -2.8 774,121 + -0.3 774,121 + +0.7 774,121 + -1.7 774,122 - -0.4 774,155 - -1.3 774,155 - -0.9 774,346 + tssH LU632_RS03880 0.13 +2.3 774,547 - tssH LU632_RS03880 0.21 -0.6
Or see this region's nucleotide sequence