Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03815 and LU632_RS03820 are separated by 96 nucleotides LU632_RS03820 and LU632_RS03825 are separated by 7 nucleotides LU632_RS03825 and LU632_RS03830 overlap by 82 nucleotides LU632_RS03830 and LU632_RS03835 are separated by 150 nucleotides LU632_RS03835 and tagH are separated by 256 nucleotides
LU632_RS03815: LU632_RS03815 - type VI secretion system tube protein Hcp, at 762,026 to 762,508
_RS03815
LU632_RS03820: LU632_RS03820 - peptidoglycan-binding protein, at 762,605 to 763,321
_RS03820
LU632_RS03825: LU632_RS03825 - IS1 family transposase, at 763,329 to 763,832
_RS03825
LU632_RS03830: LU632_RS03830 - transposase, at 763,751 to 764,026
_RS03830
LU632_RS03835: LU632_RS03835 - hypothetical protein, at 764,177 to 764,452
_RS03835
LU632_RS03840: tagH - type VI secretion system-associated FHA domain protein TagH, at 764,709 to 766,553
tagH
Position (kb) 763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 762.357 kb on - strand, within LU632_RS03815 at 762.357 kb on - strand, within LU632_RS03815 at 762.488 kb on - strand at 762.507 kb on - strand at 762.507 kb on - strand at 762.610 kb on + strand at 762.667 kb on - strand at 762.675 kb on + strand at 762.769 kb on + strand, within LU632_RS03820 at 762.769 kb on + strand, within LU632_RS03820 at 762.937 kb on + strand, within LU632_RS03820 at 762.969 kb on + strand, within LU632_RS03820 at 763.019 kb on - strand, within LU632_RS03820 at 763.044 kb on + strand, within LU632_RS03820 at 763.044 kb on + strand, within LU632_RS03820 at 763.044 kb on + strand, within LU632_RS03820 at 763.045 kb on - strand, within LU632_RS03820 at 763.046 kb on + strand, within LU632_RS03820 at 763.113 kb on + strand, within LU632_RS03820 at 763.113 kb on + strand, within LU632_RS03820 at 763.147 kb on + strand, within LU632_RS03820 at 763.148 kb on - strand, within LU632_RS03820 at 763.150 kb on + strand, within LU632_RS03820 at 763.169 kb on - strand, within LU632_RS03820 at 763.206 kb on + strand, within LU632_RS03820 at 763.208 kb on + strand, within LU632_RS03820 at 763.208 kb on + strand, within LU632_RS03820 at 763.209 kb on - strand, within LU632_RS03820 at 763.217 kb on + strand, within LU632_RS03820 at 763.218 kb on - strand, within LU632_RS03820 at 763.242 kb on - strand, within LU632_RS03820 at 764.051 kb on + strand at 764.051 kb on + strand at 764.097 kb on - strand at 764.106 kb on - strand at 764.106 kb on - strand at 764.141 kb on + strand at 764.144 kb on - strand at 764.176 kb on - strand at 764.176 kb on - strand at 764.186 kb on - strand at 764.230 kb on + strand, within LU632_RS03835 at 764.230 kb on + strand, within LU632_RS03835 at 764.284 kb on + strand, within LU632_RS03835 at 764.289 kb on - strand, within LU632_RS03835 at 764.340 kb on + strand, within LU632_RS03835 at 764.341 kb on - strand, within LU632_RS03835 at 764.341 kb on - strand, within LU632_RS03835 at 764.345 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.372 kb on - strand, within LU632_RS03835 at 764.445 kb on + strand at 764.445 kb on + strand at 764.450 kb on + strand at 764.454 kb on + strand at 764.454 kb on + strand at 764.517 kb on + strand at 764.517 kb on + strand at 764.518 kb on - strand at 764.520 kb on + strand at 764.551 kb on - strand at 764.718 kb on - strand at 764.810 kb on + strand at 764.810 kb on + strand at 764.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1) remove 762,357 - LU632_RS03815 0.69 +1.6 762,357 - LU632_RS03815 0.69 +2.8 762,488 - +1.1 762,507 - -2.8 762,507 - -0.8 762,610 + -1.8 762,667 - +1.6 762,675 + -1.4 762,769 + LU632_RS03820 0.23 +1.2 762,769 + LU632_RS03820 0.23 +0.7 762,937 + LU632_RS03820 0.46 -1.9 762,969 + LU632_RS03820 0.51 +0.5 763,019 - LU632_RS03820 0.58 -0.2 763,044 + LU632_RS03820 0.61 +0.7 763,044 + LU632_RS03820 0.61 +1.0 763,044 + LU632_RS03820 0.61 -0.7 763,045 - LU632_RS03820 0.61 -0.9 763,046 + LU632_RS03820 0.62 +1.7 763,113 + LU632_RS03820 0.71 -0.3 763,113 + LU632_RS03820 0.71 +2.2 763,147 + LU632_RS03820 0.76 -0.0 763,148 - LU632_RS03820 0.76 -0.2 763,150 + LU632_RS03820 0.76 +2.4 763,169 - LU632_RS03820 0.79 +1.7 763,206 + LU632_RS03820 0.84 -2.2 763,208 + LU632_RS03820 0.84 +1.5 763,208 + LU632_RS03820 0.84 +0.7 763,209 - LU632_RS03820 0.84 +0.7 763,217 + LU632_RS03820 0.85 -1.3 763,218 - LU632_RS03820 0.85 -1.0 763,242 - LU632_RS03820 0.89 -0.4 764,051 + +0.7 764,051 + -0.3 764,097 - +4.2 764,106 - -1.9 764,106 - -0.4 764,141 + -0.4 764,144 - -0.5 764,176 - -1.3 764,176 - +2.9 764,186 - +0.8 764,230 + LU632_RS03835 0.19 +2.3 764,230 + LU632_RS03835 0.19 -2.3 764,284 + LU632_RS03835 0.39 -1.9 764,289 - LU632_RS03835 0.41 -0.5 764,340 + LU632_RS03835 0.59 -0.4 764,341 - LU632_RS03835 0.59 +0.3 764,341 - LU632_RS03835 0.59 -1.2 764,345 - LU632_RS03835 0.61 +1.6 764,372 - LU632_RS03835 0.71 +2.7 764,372 - LU632_RS03835 0.71 +4.2 764,372 - LU632_RS03835 0.71 +1.5 764,445 + +1.3 764,445 + -1.4 764,450 + -0.5 764,454 + -2.9 764,454 + +0.7 764,517 + -3.1 764,517 + -1.4 764,518 - -2.4 764,520 + -1.5 764,551 - -0.3 764,718 - +0.1 764,810 + +0.7 764,810 + +0.6 764,810 + -1.1
Or see this region's nucleotide sequence