Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03545

Experiment: Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS03540 and LU632_RS03545 are separated by 265 nucleotidesLU632_RS03545 and LU632_RS03550 are separated by 20 nucleotides LU632_RS03540: LU632_RS03540 - hypothetical protein, at 716,859 to 717,590 _RS03540 LU632_RS03545: LU632_RS03545 - hypothetical protein, at 717,856 to 718,056 _RS03545 LU632_RS03550: LU632_RS03550 - phage portal protein, at 718,077 to 719,099 _RS03550 Position (kb) 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 716.869 kb on + strandat 716.870 kb on - strandat 716.870 kb on - strandat 716.870 kb on - strandat 716.881 kb on + strandat 716.898 kb on - strandat 716.898 kb on - strandat 716.906 kb on + strandat 716.906 kb on + strandat 716.907 kb on - strandat 717.105 kb on - strand, within LU632_RS03540at 717.165 kb on + strand, within LU632_RS03540at 717.166 kb on - strand, within LU632_RS03540at 717.211 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.219 kb on - strand, within LU632_RS03540at 717.228 kb on + strand, within LU632_RS03540at 717.248 kb on + strand, within LU632_RS03540at 717.318 kb on - strand, within LU632_RS03540at 717.336 kb on - strand, within LU632_RS03540at 717.341 kb on + strand, within LU632_RS03540at 717.342 kb on - strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.423 kb on + strand, within LU632_RS03540at 717.425 kb on + strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.426 kb on - strand, within LU632_RS03540at 717.452 kb on + strand, within LU632_RS03540at 717.588 kb on + strandat 717.588 kb on + strandat 717.589 kb on - strandat 717.705 kb on - strandat 717.716 kb on + strandat 717.716 kb on + strandat 717.717 kb on - strandat 717.858 kb on - strandat 717.871 kb on - strandat 717.920 kb on + strand, within LU632_RS03545at 717.963 kb on - strand, within LU632_RS03545at 718.079 kb on - strandat 718.099 kb on + strandat 718.227 kb on - strand, within LU632_RS03550at 718.239 kb on - strand, within LU632_RS03550at 718.247 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.302 kb on + strand, within LU632_RS03550at 718.421 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.480 kb on + strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.481 kb on - strand, within LU632_RS03550at 718.514 kb on - strand, within LU632_RS03550at 718.516 kb on + strand, within LU632_RS03550at 718.562 kb on + strand, within LU632_RS03550at 718.577 kb on - strand, within LU632_RS03550at 718.591 kb on + strand, within LU632_RS03550at 718.592 kb on - strand, within LU632_RS03550at 718.604 kb on + strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.605 kb on - strand, within LU632_RS03550at 718.711 kb on + strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.712 kb on - strand, within LU632_RS03550at 718.740 kb on + strand, within LU632_RS03550at 718.789 kb on - strand, within LU632_RS03550at 718.849 kb on + strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.850 kb on - strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550at 718.899 kb on + strand, within LU632_RS03550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 9 Petiole 1 (TE2-S-C9-P1)
remove
716,869 + +0.7
716,870 - -0.3
716,870 - +3.9
716,870 - +0.9
716,881 + -2.0
716,898 - -1.7
716,898 - +1.9
716,906 + +0.1
716,906 + -0.3
716,907 - +0.7
717,105 - LU632_RS03540 0.34 +1.6
717,165 + LU632_RS03540 0.42 +0.6
717,166 - LU632_RS03540 0.42 +0.7
717,211 - LU632_RS03540 0.48 -0.8
717,219 - LU632_RS03540 0.49 -2.1
717,219 - LU632_RS03540 0.49 -1.0
717,228 + LU632_RS03540 0.50 +2.2
717,248 + LU632_RS03540 0.53 -0.5
717,318 - LU632_RS03540 0.63 -1.1
717,336 - LU632_RS03540 0.65 +0.9
717,341 + LU632_RS03540 0.66 -1.7
717,342 - LU632_RS03540 0.66 -0.6
717,423 + LU632_RS03540 0.77 -0.1
717,423 + LU632_RS03540 0.77 -1.1
717,425 + LU632_RS03540 0.77 -1.1
717,426 - LU632_RS03540 0.77 +1.3
717,426 - LU632_RS03540 0.77 +1.2
717,426 - LU632_RS03540 0.77 +1.8
717,452 + LU632_RS03540 0.81 -2.1
717,588 + -3.0
717,588 + +0.7
717,589 - +0.5
717,705 - +1.2
717,716 + +1.3
717,716 + -0.4
717,717 - -2.3
717,858 - -0.2
717,871 - +1.2
717,920 + LU632_RS03545 0.32 -1.5
717,963 - LU632_RS03545 0.53 -0.4
718,079 - -0.5
718,099 + -1.3
718,227 - LU632_RS03550 0.15 +0.7
718,239 - LU632_RS03550 0.16 +0.6
718,247 + LU632_RS03550 0.17 -0.1
718,302 + LU632_RS03550 0.22 +0.5
718,302 + LU632_RS03550 0.22 -2.1
718,421 + LU632_RS03550 0.34 +1.8
718,480 + LU632_RS03550 0.39 -0.7
718,480 + LU632_RS03550 0.39 +0.9
718,480 + LU632_RS03550 0.39 +0.7
718,480 + LU632_RS03550 0.39 +0.6
718,481 - LU632_RS03550 0.39 -0.8
718,481 - LU632_RS03550 0.39 -2.1
718,481 - LU632_RS03550 0.39 -2.6
718,514 - LU632_RS03550 0.43 -0.4
718,516 + LU632_RS03550 0.43 -0.3
718,562 + LU632_RS03550 0.47 +0.7
718,577 - LU632_RS03550 0.49 +2.4
718,591 + LU632_RS03550 0.50 +2.3
718,592 - LU632_RS03550 0.50 -0.7
718,604 + LU632_RS03550 0.52 +1.3
718,605 - LU632_RS03550 0.52 -0.7
718,605 - LU632_RS03550 0.52 +1.3
718,605 - LU632_RS03550 0.52 +0.4
718,711 + LU632_RS03550 0.62 +2.6
718,712 - LU632_RS03550 0.62 +3.0
718,712 - LU632_RS03550 0.62 +1.0
718,740 + LU632_RS03550 0.65 +1.1
718,789 - LU632_RS03550 0.70 -0.8
718,849 + LU632_RS03550 0.75 +0.1
718,850 - LU632_RS03550 0.76 -1.6
718,850 - LU632_RS03550 0.76 -2.1
718,899 + LU632_RS03550 0.80 -0.1
718,899 + LU632_RS03550 0.80 -0.8

Or see this region's nucleotide sequence